Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 63648 | 0.69 | 0.955213 |
|
Target: 5'- ---gUGCCUGAAGgugaUGGUgcuGGUCUCCu -3' miRNA: 3'- gaaaAUGGACUUCg---GCCA---CCAGAGGu -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 62924 | 0.66 | 0.987435 |
|
Target: 5'- -cUUUGCCcu--GUCuGUGGUCUCCAg -3' miRNA: 3'- gaAAAUGGacuuCGGcCACCAGAGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 49876 | 0.66 | 0.988932 |
|
Target: 5'- ----cACCgucggGAGGCUGG-GGUcCUCCGg -3' miRNA: 3'- gaaaaUGGa----CUUCGGCCaCCA-GAGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 43633 | 0.67 | 0.983975 |
|
Target: 5'- -----gUCUGugauGAGCCGGUGGguggaacgCUCCAg -3' miRNA: 3'- gaaaauGGAC----UUCGGCCACCa-------GAGGU- -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 42836 | 0.76 | 0.638893 |
|
Target: 5'- ---cUGCaUGAGGCCGGUGGUCUUg- -3' miRNA: 3'- gaaaAUGgACUUCGGCCACCAGAGgu -5' |
|||||||
| 29070 | 5' | -51.6 | NC_006146.1 | + | 11138 | 0.7 | 0.909399 |
|
Target: 5'- ---cUACCUGggGgCGGUGGUggUCAc -3' miRNA: 3'- gaaaAUGGACuuCgGCCACCAgaGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home