miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29070 5' -51.6 NC_006146.1 + 71482 0.67 0.985785
Target:  5'- ----gGCCUGccguuuGGCCGGUGGUg-CCu -3'
miRNA:   3'- gaaaaUGGACu-----UCGGCCACCAgaGGu -5'
29070 5' -51.6 NC_006146.1 + 101143 1.09 0.007866
Target:  5'- uCUUUUACCUGAAGCCGGUGGUCUCCAa -3'
miRNA:   3'- -GAAAAUGGACUUCGGCCACCAGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 42836 0.76 0.638893
Target:  5'- ---cUGCaUGAGGCCGGUGGUCUUg- -3'
miRNA:   3'- gaaaAUGgACUUCGGCCACCAGAGgu -5'
29070 5' -51.6 NC_006146.1 + 96678 0.69 0.951116
Target:  5'- ----gGCCUGAAGaaGaaGGUCUCCAg -3'
miRNA:   3'- gaaaaUGGACUUCggCcaCCAGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 116604 0.69 0.955213
Target:  5'- ----aGCCUGAaaucauGGUC-GUGGUCUCCGu -3'
miRNA:   3'- gaaaaUGGACU------UCGGcCACCAGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 98676 0.69 0.956784
Target:  5'- ---gUGCCUucacgcgcaguggguGggGCCGcUGGUCUCCc -3'
miRNA:   3'- gaaaAUGGA---------------CuuCGGCcACCAGAGGu -5'
29070 5' -51.6 NC_006146.1 + 120223 0.68 0.972209
Target:  5'- ---gUGCCUGuggGGCCGG-GGUUUCg- -3'
miRNA:   3'- gaaaAUGGACu--UCGGCCaCCAGAGgu -5'
29070 5' -51.6 NC_006146.1 + 64656 0.68 0.973331
Target:  5'- ----gGCCaGggGCacgucgccgugguaGGUGGUCUCCu -3'
miRNA:   3'- gaaaaUGGaCuuCGg-------------CCACCAGAGGu -5'
29070 5' -51.6 NC_006146.1 + 148244 0.67 0.979837
Target:  5'- ---aUGCa-GAGGCCGGUGGUUgagaauUCCu -3'
miRNA:   3'- gaaaAUGgaCUUCGGCCACCAG------AGGu -5'
29070 5' -51.6 NC_006146.1 + 43633 0.67 0.983975
Target:  5'- -----gUCUGugauGAGCCGGUGGguggaacgCUCCAg -3'
miRNA:   3'- gaaaauGGAC----UUCGGCCACCa-------GAGGU- -5'
29070 5' -51.6 NC_006146.1 + 62924 0.66 0.987435
Target:  5'- -cUUUGCCcu--GUCuGUGGUCUCCAg -3'
miRNA:   3'- gaAAAUGGacuuCGGcCACCAGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 71775 0.66 0.989074
Target:  5'- ----gGCUUGggGCUGGUGGcguuagggcuuguggCUCCc -3'
miRNA:   3'- gaaaaUGGACuuCGGCCACCa--------------GAGGu -5'
29070 5' -51.6 NC_006146.1 + 65502 0.66 0.988932
Target:  5'- ----gGCgUGggGCUGGUugguguggGGUCUUCAu -3'
miRNA:   3'- gaaaaUGgACuuCGGCCA--------CCAGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 49876 0.66 0.988932
Target:  5'- ----cACCgucggGAGGCUGG-GGUcCUCCGg -3'
miRNA:   3'- gaaaaUGGa----CUUCGGCCaCCA-GAGGU- -5'
29070 5' -51.6 NC_006146.1 + 96899 0.69 0.937353
Target:  5'- ----aGCgUGAGGCCguGGUGGUCaguuUCCAg -3'
miRNA:   3'- gaaaaUGgACUUCGG--CCACCAG----AGGU- -5'
29070 5' -51.6 NC_006146.1 + 152810 0.66 0.987435
Target:  5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3'
miRNA:   3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 146655 0.66 0.987435
Target:  5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3'
miRNA:   3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 143577 0.66 0.987435
Target:  5'- ----gGCCUGGaaGGuCCGGUGG-CUUCGc -3'
miRNA:   3'- gaaaaUGGACU--UC-GGCCACCaGAGGU- -5'
29070 5' -51.6 NC_006146.1 + 77963 0.68 0.966086
Target:  5'- ----gGCC-GGAGCCGGUGGcCUUgGa -3'
miRNA:   3'- gaaaaUGGaCUUCGGCCACCaGAGgU- -5'
29070 5' -51.6 NC_006146.1 + 89455 0.72 0.835401
Target:  5'- ----gGCgUGAAGCUGGUGGUUguuugCCAc -3'
miRNA:   3'- gaaaaUGgACUUCGGCCACCAGa----GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.