miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 123590 0.66 0.930609
Target:  5'- gGCCAucauCcAgGAGGCCCGGGAgGAGu- -3'
miRNA:   3'- -CGGUu---GcUgCUCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 83084 0.66 0.930609
Target:  5'- gGUCGGCGGCGAcacucuCCCAGAGggUGAGGa -3'
miRNA:   3'- -CGGUUGCUGCUcc----GGGUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 20903 0.66 0.930609
Target:  5'- gGCCuuCGugGAGGCCCuGAGucCGGc-- -3'
miRNA:   3'- -CGGuuGCugCUCCGGGuCUU--GCUcca -5'
29071 3' -56.3 NC_006146.1 + 122366 0.66 0.9301
Target:  5'- cGgCAACGGCGAaggcggaugcggcGGCCaGGAACgcgGAGGUg -3'
miRNA:   3'- -CgGUUGCUGCU-------------CCGGgUCUUG---CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 56302 0.66 0.9301
Target:  5'- cGCCGccuCGAgGuGGCCCAGGccguagcugcgccGCGAGa- -3'
miRNA:   3'- -CGGUu--GCUgCuCCGGGUCU-------------UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 109326 0.66 0.92542
Target:  5'- aGCCGGCucuuccucaGCGuGGCCCucGGggUGGGGa -3'
miRNA:   3'- -CGGUUGc--------UGCuCCGGG--UCuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 47652 0.66 0.92542
Target:  5'- gGCC-GCGGCccGGCCCAGcGCGGcGGc -3'
miRNA:   3'- -CGGuUGCUGcuCCGGGUCuUGCU-CCa -5'
29071 3' -56.3 NC_006146.1 + 115194 0.66 0.92542
Target:  5'- gGCCAGCGGCGGGcagaGCCCcccGGCGGcGGc -3'
miRNA:   3'- -CGGUUGCUGCUC----CGGGuc-UUGCU-CCa -5'
29071 3' -56.3 NC_006146.1 + 109193 0.66 0.92542
Target:  5'- gGCCGGgGGCauguaGGGCaUCAGAGCGcAGGUg -3'
miRNA:   3'- -CGGUUgCUGc----UCCG-GGUCUUGC-UCCA- -5'
29071 3' -56.3 NC_006146.1 + 128868 0.66 0.924889
Target:  5'- aGCuCAcCGGCGugagcccGGGCCCAGAGgGAGu- -3'
miRNA:   3'- -CG-GUuGCUGC-------UCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 39045 0.66 0.92
Target:  5'- gGCCAGCaGGCaGGGGCCCuguGAAUGGu-- -3'
miRNA:   3'- -CGGUUG-CUG-CUCCGGGu--CUUGCUcca -5'
29071 3' -56.3 NC_006146.1 + 42241 0.66 0.92
Target:  5'- uGCCAACGACccccUCCGGcGCGAGGa -3'
miRNA:   3'- -CGGUUGCUGcuccGGGUCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 33150 0.66 0.919445
Target:  5'- aCCAGCgGACGAGcggacccccaggaGCuCCAGAACcGGGUa -3'
miRNA:   3'- cGGUUG-CUGCUC-------------CG-GGUCUUGcUCCA- -5'
29071 3' -56.3 NC_006146.1 + 124133 0.66 0.914348
Target:  5'- gGCCAGCcauccgccCGGGGUCgGGAgGCGAGGa -3'
miRNA:   3'- -CGGUUGcu------GCUCCGGgUCU-UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 170190 0.66 0.914348
Target:  5'- cCCGAgGGCGGGGCCgGGGccugGCGGGn- -3'
miRNA:   3'- cGGUUgCUGCUCCGGgUCU----UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 90241 0.66 0.914348
Target:  5'- aGCCGAgGGaGAGGCCgAGGuaGAGGa -3'
miRNA:   3'- -CGGUUgCUgCUCCGGgUCUugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 44946 0.66 0.914348
Target:  5'- gGCCAggggcGCGGgGAGGCCC----CGGGGg -3'
miRNA:   3'- -CGGU-----UGCUgCUCCGGGucuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 114951 0.66 0.914348
Target:  5'- cUCAuCGAUGAGuGCCCuGGAgGAGGc -3'
miRNA:   3'- cGGUuGCUGCUC-CGGGuCUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 33226 0.66 0.914348
Target:  5'- aGCCGG-GAUGGGGCUgGGGuucCGGGGg -3'
miRNA:   3'- -CGGUUgCUGCUCCGGgUCUu--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 137903 0.66 0.914348
Target:  5'- cCCGugGACaGGGCCgGGGGuucCGGGGg -3'
miRNA:   3'- cGGUugCUGcUCCGGgUCUU---GCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.