miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 123590 0.66 0.930609
Target:  5'- gGCCAucauCcAgGAGGCCCGGGAgGAGu- -3'
miRNA:   3'- -CGGUu---GcUgCUCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 127455 0.66 0.908466
Target:  5'- cGCUccaGAUGugGcGGCCCGcaggcuacugauGGACGAGGa -3'
miRNA:   3'- -CGG---UUGCugCuCCGGGU------------CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 105186 0.66 0.908466
Target:  5'- uCCAGUGAcCGGGGCCgGGGAgcCGGGGg -3'
miRNA:   3'- cGGUUGCU-GCUCCGGgUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 61218 0.66 0.908466
Target:  5'- uGCCc-CGAuCGGGuaCCGGAcuGCGAGGUg -3'
miRNA:   3'- -CGGuuGCU-GCUCcgGGUCU--UGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 26127 0.66 0.907865
Target:  5'- uCCAugGAaaggcacCGGGGCCCGGucggaaagagcACGGGGg -3'
miRNA:   3'- cGGUugCU-------GCUCCGGGUCu----------UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 101818 0.66 0.902355
Target:  5'- gGCuCGACGACGAguucggcggGGCCC-GAGCGcucGGGc -3'
miRNA:   3'- -CG-GUUGCUGCU---------CCGGGuCUUGC---UCCa -5'
29071 3' -56.3 NC_006146.1 + 161758 0.66 0.902355
Target:  5'- gGCUGAggucCGAgGGGGCgCCuGGGCGGGGg -3'
miRNA:   3'- -CGGUU----GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 4673 0.66 0.902355
Target:  5'- gGCCggGugGGCGAGGCgggggcagaUCAGAuguuUGAGGUg -3'
miRNA:   3'- -CGG--UugCUGCUCCG---------GGUCUu---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 89397 0.66 0.902355
Target:  5'- uCCAGCGAUGGGG---GGAugGAGGa -3'
miRNA:   3'- cGGUUGCUGCUCCgggUCUugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 124133 0.66 0.914348
Target:  5'- gGCCAGCcauccgccCGGGGUCgGGAgGCGAGGa -3'
miRNA:   3'- -CGGUUGcu------GCUCCGGgUCU-UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 15274 0.66 0.914348
Target:  5'- gGCCAugcaGCGGCuGAa--CCGGAGCGAGGg -3'
miRNA:   3'- -CGGU----UGCUG-CUccgGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 33226 0.66 0.914348
Target:  5'- aGCCGG-GAUGGGGCUgGGGuucCGGGGg -3'
miRNA:   3'- -CGGUUgCUGCUCCGGgUCUu--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 83084 0.66 0.930609
Target:  5'- gGUCGGCGGCGAcacucuCCCAGAGggUGAGGa -3'
miRNA:   3'- -CGGUUGCUGCUcc----GGGUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 20903 0.66 0.930609
Target:  5'- gGCCuuCGugGAGGCCCuGAGucCGGc-- -3'
miRNA:   3'- -CGGuuGCugCUCCGGGuCUU--GCUcca -5'
29071 3' -56.3 NC_006146.1 + 122366 0.66 0.9301
Target:  5'- cGgCAACGGCGAaggcggaugcggcGGCCaGGAACgcgGAGGUg -3'
miRNA:   3'- -CgGUUGCUGCU-------------CCGGgUCUUG---CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 115194 0.66 0.92542
Target:  5'- gGCCAGCGGCGGGcagaGCCCcccGGCGGcGGc -3'
miRNA:   3'- -CGGUUGCUGCUC----CGGGuc-UUGCU-CCa -5'
29071 3' -56.3 NC_006146.1 + 109193 0.66 0.92542
Target:  5'- gGCCGGgGGCauguaGGGCaUCAGAGCGcAGGUg -3'
miRNA:   3'- -CGGUUgCUGc----UCCG-GGUCUUGC-UCCA- -5'
29071 3' -56.3 NC_006146.1 + 42241 0.66 0.92
Target:  5'- uGCCAACGACccccUCCGGcGCGAGGa -3'
miRNA:   3'- -CGGUUGCUGcuccGGGUCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 128868 0.66 0.924889
Target:  5'- aGCuCAcCGGCGugagcccGGGCCCAGAGgGAGu- -3'
miRNA:   3'- -CG-GUuGCUGC-------UCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 33150 0.66 0.919445
Target:  5'- aCCAGCgGACGAGcggacccccaggaGCuCCAGAACcGGGUa -3'
miRNA:   3'- cGGUUG-CUGCUC-------------CG-GGUCUUGcUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.