miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 42241 0.66 0.92
Target:  5'- uGCCAACGACccccUCCGGcGCGAGGa -3'
miRNA:   3'- -CGGUUGCUGcuccGGGUCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 109193 0.66 0.92542
Target:  5'- gGCCGGgGGCauguaGGGCaUCAGAGCGcAGGUg -3'
miRNA:   3'- -CGGUUgCUGc----UCCG-GGUCUUGC-UCCA- -5'
29071 3' -56.3 NC_006146.1 + 115194 0.66 0.92542
Target:  5'- gGCCAGCGGCGGGcagaGCCCcccGGCGGcGGc -3'
miRNA:   3'- -CGGUUGCUGCUC----CGGGuc-UUGCU-CCa -5'
29071 3' -56.3 NC_006146.1 + 122366 0.66 0.9301
Target:  5'- cGgCAACGGCGAaggcggaugcggcGGCCaGGAACgcgGAGGUg -3'
miRNA:   3'- -CgGUUGCUGCU-------------CCGGgUCUUG---CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 20903 0.66 0.930609
Target:  5'- gGCCuuCGugGAGGCCCuGAGucCGGc-- -3'
miRNA:   3'- -CGGuuGCugCUCCGGGuCUU--GCUcca -5'
29071 3' -56.3 NC_006146.1 + 83084 0.66 0.930609
Target:  5'- gGUCGGCGGCGAcacucuCCCAGAGggUGAGGa -3'
miRNA:   3'- -CGGUUGCUGCUcc----GGGUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 123590 0.66 0.930609
Target:  5'- gGCCAucauCcAgGAGGCCCGGGAgGAGu- -3'
miRNA:   3'- -CGGUu---GcUgCUCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 15274 0.66 0.914348
Target:  5'- gGCCAugcaGCGGCuGAa--CCGGAGCGAGGg -3'
miRNA:   3'- -CGGU----UGCUG-CUccgGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 124133 0.66 0.914348
Target:  5'- gGCCAGCcauccgccCGGGGUCgGGAgGCGAGGa -3'
miRNA:   3'- -CGGUUGcu------GCUCCGGgUCU-UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 127455 0.66 0.908466
Target:  5'- cGCUccaGAUGugGcGGCCCGcaggcuacugauGGACGAGGa -3'
miRNA:   3'- -CGG---UUGCugCuCCGGGU------------CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 105186 0.66 0.908466
Target:  5'- uCCAGUGAcCGGGGCCgGGGAgcCGGGGg -3'
miRNA:   3'- cGGUUGCU-GCUCCGGgUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 61218 0.66 0.908466
Target:  5'- uGCCc-CGAuCGGGuaCCGGAcuGCGAGGUg -3'
miRNA:   3'- -CGGuuGCU-GCUCcgGGUCU--UGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 128868 0.66 0.924889
Target:  5'- aGCuCAcCGGCGugagcccGGGCCCAGAGgGAGu- -3'
miRNA:   3'- -CG-GUuGCUGC-------UCCGGGUCUUgCUCca -5'
29071 3' -56.3 NC_006146.1 + 76277 0.67 0.868477
Target:  5'- aUCAugGACccGGCCCAGuACGuGGg -3'
miRNA:   3'- cGGUugCUGcuCCGGGUCuUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 114314 0.67 0.868477
Target:  5'- aCCGGCGGCGGGcucggcGCCCGGccgccccuGACgGAGGUg -3'
miRNA:   3'- cGGUUGCUGCUC------CGGGUC--------UUG-CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 81644 0.67 0.875683
Target:  5'- uGCCGggACGuuGGGGCUCGGAGggugcCGGGGa -3'
miRNA:   3'- -CGGU--UGCugCUCCGGGUCUU-----GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 141457 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 147613 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 144535 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 153768 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.