Results 41 - 60 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29071 | 3' | -56.3 | NC_006146.1 | + | 168490 | 0.67 | 0.868477 |
Target: 5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3' miRNA: 3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 170353 | 0.67 | 0.868477 |
Target: 5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3' miRNA: 3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 50029 | 0.67 | 0.868477 |
Target: 5'- aGCCGGgGuCGAGGCgCAGgAGgGAGGc -3' miRNA: 3'- -CGGUUgCuGCUCCGgGUC-UUgCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 110709 | 0.67 | 0.868477 |
Target: 5'- uGCUguuuGugGACGAGGCCaacuuuaucaAGAAgGAGGc -3' miRNA: 3'- -CGG----UugCUGCUCCGGg---------UCUUgCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 57398 | 0.67 | 0.882679 |
Target: 5'- --gAAUGGCGGccauGGCCCccuccuggaugaAGAGCGAGGUg -3' miRNA: 3'- cggUUGCUGCU----CCGGG------------UCUUGCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 156846 | 0.67 | 0.875683 |
Target: 5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3' miRNA: 3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 153768 | 0.67 | 0.875683 |
Target: 5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3' miRNA: 3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 144535 | 0.67 | 0.875683 |
Target: 5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3' miRNA: 3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 147613 | 0.67 | 0.875683 |
Target: 5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3' miRNA: 3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 141457 | 0.67 | 0.875683 |
Target: 5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3' miRNA: 3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 81644 | 0.67 | 0.875683 |
Target: 5'- uGCCGggACGuuGGGGCUCGGAGggugcCGGGGa -3' miRNA: 3'- -CGGU--UGCugCUCCGGGUCUU-----GCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 114314 | 0.67 | 0.868477 |
Target: 5'- aCCGGCGGCGGGcucggcGCCCGGccgccccuGACgGAGGUg -3' miRNA: 3'- cGGUUGCUGCUC------CGGGUC--------UUG-CUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 76277 | 0.67 | 0.868477 |
Target: 5'- aUCAugGACccGGCCCAGuACGuGGg -3' miRNA: 3'- cGGUugCUGcuCCGGGUCuUGCuCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 93712 | 0.67 | 0.875683 |
Target: 5'- gGCCGugGAgaCGAGGCUCAucG-GAGGUg -3' miRNA: 3'- -CGGUugCU--GCUCCGGGUcuUgCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 68744 | 0.67 | 0.882679 |
Target: 5'- --gGugGugGAGGCCCAGGugGccaagcuucAGGc -3' miRNA: 3'- cggUugCugCUCCGGGUCUugC---------UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 51967 | 0.67 | 0.882679 |
Target: 5'- cGCCGACGGgGAGGUcuCCGGcauGCGGGc- -3' miRNA: 3'- -CGGUUGCUgCUCCG--GGUCu--UGCUCca -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 41032 | 0.67 | 0.88879 |
Target: 5'- aGCCGugGGaggaGGGCCUAGGAcagcuucCGAGGg -3' miRNA: 3'- -CGGUugCUgc--UCCGGGUCUU-------GCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 46038 | 0.67 | 0.889458 |
Target: 5'- --aGGCGACGGGGCCCucca-GGGGa -3' miRNA: 3'- cggUUGCUGCUCCGGGucuugCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 70837 | 0.67 | 0.889458 |
Target: 5'- gGCCAAgGGCcaagcGGGCCCGG--UGAGGg -3' miRNA: 3'- -CGGUUgCUGc----UCCGGGUCuuGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 170518 | 0.67 | 0.889458 |
Target: 5'- cGCgCGGCgGGCGGGGCCUgagGGGGCGcGGc -3' miRNA: 3'- -CG-GUUG-CUGCUCCGGG---UCUUGCuCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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