Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29071 | 3' | -56.3 | NC_006146.1 | + | 101590 | 1.09 | 0.003419 |
Target: 5'- aGCCAACGACGAGGCCCAGAACGAGGUc -3' miRNA: 3'- -CGGUUGCUGCUCCGGGUCUUGCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 168355 | 0.86 | 0.113661 |
Target: 5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3' miRNA: 3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 167423 | 0.86 | 0.113661 |
Target: 5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3' miRNA: 3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 170218 | 0.86 | 0.113661 |
Target: 5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3' miRNA: 3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 169287 | 0.86 | 0.113661 |
Target: 5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3' miRNA: 3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 43503 | 0.8 | 0.234945 |
Target: 5'- uCCGGCGGCGGGGCCCAGccccaagacaccuccACGAGGg -3' miRNA: 3'- cGGUUGCUGCUCCGGGUCu--------------UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 148459 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 142303 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 157692 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 145381 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 154615 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 151537 | 0.8 | 0.245816 |
Target: 5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3' miRNA: 3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 129233 | 0.79 | 0.303032 |
Target: 5'- aGCCAGCaggGACG-GGCCCAGGugaggcGCGAGGg -3' miRNA: 3'- -CGGUUG---CUGCuCCGGGUCU------UGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 47252 | 0.77 | 0.346572 |
Target: 5'- gGUCGACGugGccccuGGCCCGGGugACGAGGUc -3' miRNA: 3'- -CGGUUGCugCu----CCGGGUCU--UGCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 54156 | 0.77 | 0.357355 |
Target: 5'- cGUCAGCGACcGGGCCCcccagauauucauugGGAAUGAGGUc -3' miRNA: 3'- -CGGUUGCUGcUCCGGG---------------UCUUGCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 158554 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 143163 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 152397 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 149319 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 146241 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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