Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29071 | 3' | -56.3 | NC_006146.1 | + | 158554 | 0.76 | 0.428592 |
Target: 5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3' miRNA: 3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 117888 | 0.75 | 0.446324 |
Target: 5'- gGCCAgccGCG-UGAGGCCCAGGGCcagaaGAGGg -3' miRNA: 3'- -CGGU---UGCuGCUCCGGGUCUUG-----CUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 28074 | 0.75 | 0.452626 |
Target: 5'- cGCCAugGGCuucggggcauucuuGAGGCCCGGGugGGGa- -3' miRNA: 3'- -CGGUugCUG--------------CUCCGGGUCUugCUCca -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 99375 | 0.74 | 0.501827 |
Target: 5'- gGCCGcGCGuuGAGGCCCAgGAGCGAGu- -3' miRNA: 3'- -CGGU-UGCugCUCCGGGU-CUUGCUCca -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 3887 | 0.74 | 0.501827 |
Target: 5'- gGUCu-CGGCGAGGCCCAccGACGAGGc -3' miRNA: 3'- -CGGuuGCUGCUCCGGGUc-UUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 152863 | 0.74 | 0.521001 |
Target: 5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3' miRNA: 3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 155941 | 0.74 | 0.521001 |
Target: 5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3' miRNA: 3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 146707 | 0.74 | 0.521001 |
Target: 5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3' miRNA: 3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 149785 | 0.74 | 0.521001 |
Target: 5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3' miRNA: 3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 143630 | 0.74 | 0.521001 |
Target: 5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3' miRNA: 3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 45417 | 0.73 | 0.560147 |
Target: 5'- gGCCAGCG-CGAGGCCCcGGcCG-GGUu -3' miRNA: 3'- -CGGUUGCuGCUCCGGGuCUuGCuCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 44755 | 0.73 | 0.580032 |
Target: 5'- gGCUGugGuuguCGGGGCCCGGcgGGCGGGGa -3' miRNA: 3'- -CGGUugCu---GCUCCGGGUC--UUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 33031 | 0.73 | 0.580032 |
Target: 5'- uGCCGGCccggGGCGGGGCCCGGGACa---- -3' miRNA: 3'- -CGGUUG----CUGCUCCGGGUCUUGcucca -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 76411 | 0.73 | 0.584028 |
Target: 5'- cGCCGACGGCGGcGugaccauguucacauGCCCGGuggaguGCGAGGUg -3' miRNA: 3'- -CGGUUGCUGCU-C---------------CGGGUCu-----UGCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 15809 | 0.73 | 0.600062 |
Target: 5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3' miRNA: 3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 18997 | 0.73 | 0.600062 |
Target: 5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3' miRNA: 3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 21964 | 0.73 | 0.600062 |
Target: 5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3' miRNA: 3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 15920 | 0.73 | 0.600062 |
Target: 5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3' miRNA: 3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 12730 | 0.73 | 0.600062 |
Target: 5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3' miRNA: 3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5' |
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29071 | 3' | -56.3 | NC_006146.1 | + | 18887 | 0.73 | 0.600062 |
Target: 5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3' miRNA: 3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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