miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 18997 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 18887 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 15920 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 15809 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 12730 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 89795 0.72 0.610115
Target:  5'- gGCCGugGACGAGGacgaggCAGAGgCGGGGg -3'
miRNA:   3'- -CGGUugCUGCUCCgg----GUCUU-GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 50716 0.72 0.630261
Target:  5'- gGCCGGgucauaGACGAgGGCCCGGu-CGGGGUa -3'
miRNA:   3'- -CGGUUg-----CUGCU-CCGGGUCuuGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 10667 0.72 0.630261
Target:  5'- --gGACGGgGAGGCCCGGGGCGAu-- -3'
miRNA:   3'- cggUUGCUgCUCCGGGUCUUGCUcca -5'
29071 3' -56.3 NC_006146.1 + 97861 0.72 0.64034
Target:  5'- gGCCGcCGACcccGGGCCgUGGAACGAGGg -3'
miRNA:   3'- -CGGUuGCUGc--UCCGG-GUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 123158 0.72 0.64034
Target:  5'- cGCCAgggcgcGCGAgGAGGCCCcGGACGAc-- -3'
miRNA:   3'- -CGGU------UGCUgCUCCGGGuCUUGCUcca -5'
29071 3' -56.3 NC_006146.1 + 147712 0.71 0.660472
Target:  5'- gGCCAggaagGCGGCGGGGCCUGGGuaauagcgggccGCGAGcGa -3'
miRNA:   3'- -CGGU-----UGCUGCUCCGGGUCU------------UGCUC-Ca -5'
29071 3' -56.3 NC_006146.1 + 12841 0.71 0.660472
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GG-UCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 11016 0.71 0.690483
Target:  5'- cCCGGCcuCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- cGGUUGcuGCUCCGGGucuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 85400 0.71 0.700403
Target:  5'- aCCGGCGugGAGGauCCCG--ACGAGGa -3'
miRNA:   3'- cGGUUGCugCUCC--GGGUcuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 124232 0.71 0.710268
Target:  5'- uCCGACGugGAGGCCaacgcCGGGGa -3'
miRNA:   3'- cGGUUGCugCUCCGGgucuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 159239 0.71 0.710268
Target:  5'- gGCCGcAUGGCGAGGaCCCcGcAAUGAGGa -3'
miRNA:   3'- -CGGU-UGCUGCUCC-GGGuC-UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 169225 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 168293 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 167361 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 53328 0.71 0.710268
Target:  5'- aGCC--CGAgGAGGCCCGGcggccGCGGGGc -3'
miRNA:   3'- -CGGuuGCUgCUCCGGGUCu----UGCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.