miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 114951 0.66 0.914348
Target:  5'- cUCAuCGAUGAGuGCCCuGGAgGAGGc -3'
miRNA:   3'- cGGUuGCUGCUC-CGGGuCUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 124133 0.66 0.914348
Target:  5'- gGCCAGCcauccgccCGGGGUCgGGAgGCGAGGa -3'
miRNA:   3'- -CGGUUGcu------GCUCCGGgUCU-UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 33226 0.66 0.914348
Target:  5'- aGCCGG-GAUGGGGCUgGGGuucCGGGGg -3'
miRNA:   3'- -CGGUUgCUGCUCCGGgUCUu--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 15274 0.66 0.914348
Target:  5'- gGCCAugcaGCGGCuGAa--CCGGAGCGAGGg -3'
miRNA:   3'- -CGGU----UGCUG-CUccgGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 89681 0.66 0.908466
Target:  5'- uCCGACGgaaGGGGCCCggGGAACGgccuGGGa -3'
miRNA:   3'- cGGUUGCug-CUCCGGG--UCUUGC----UCCa -5'
29071 3' -56.3 NC_006146.1 + 127455 0.66 0.908466
Target:  5'- cGCUccaGAUGugGcGGCCCGcaggcuacugauGGACGAGGa -3'
miRNA:   3'- -CGG---UUGCugCuCCGGGU------------CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 105186 0.66 0.908466
Target:  5'- uCCAGUGAcCGGGGCCgGGGAgcCGGGGg -3'
miRNA:   3'- cGGUUGCU-GCUCCGGgUCUU--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 61218 0.66 0.908466
Target:  5'- uGCCc-CGAuCGGGuaCCGGAcuGCGAGGUg -3'
miRNA:   3'- -CGGuuGCU-GCUCcgGGUCU--UGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 26127 0.66 0.907865
Target:  5'- uCCAugGAaaggcacCGGGGCCCGGucggaaagagcACGGGGg -3'
miRNA:   3'- cGGUugCU-------GCUCCGGGUCu----------UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 101818 0.66 0.902355
Target:  5'- gGCuCGACGACGAguucggcggGGCCC-GAGCGcucGGGc -3'
miRNA:   3'- -CG-GUUGCUGCU---------CCGGGuCUUGC---UCCa -5'
29071 3' -56.3 NC_006146.1 + 161758 0.66 0.902355
Target:  5'- gGCUGAggucCGAgGGGGCgCCuGGGCGGGGg -3'
miRNA:   3'- -CGGUU----GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 89397 0.66 0.902355
Target:  5'- uCCAGCGAUGGGG---GGAugGAGGa -3'
miRNA:   3'- cGGUUGCUGCUCCgggUCUugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 4673 0.66 0.902355
Target:  5'- gGCCggGugGGCGAGGCgggggcagaUCAGAuguuUGAGGUg -3'
miRNA:   3'- -CGG--UugCUGCUCCG---------GGUCUu---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 170518 0.67 0.889458
Target:  5'- cGCgCGGCgGGCGGGGCCUgagGGGGCGcGGc -3'
miRNA:   3'- -CG-GUUG-CUGCUCCGGG---UCUUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 70837 0.67 0.889458
Target:  5'- gGCCAAgGGCcaagcGGGCCCGG--UGAGGg -3'
miRNA:   3'- -CGGUUgCUGc----UCCGGGUCuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 67597 0.67 0.889458
Target:  5'- gGCCcgUGGCGuuuGGCCUccGGuGCGAGGa -3'
miRNA:   3'- -CGGuuGCUGCu--CCGGG--UCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 46038 0.67 0.889458
Target:  5'- --aGGCGACGGGGCCCucca-GGGGa -3'
miRNA:   3'- cggUUGCUGCUCCGGGucuugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 41032 0.67 0.88879
Target:  5'- aGCCGugGGaggaGGGCCUAGGAcagcuucCGAGGg -3'
miRNA:   3'- -CGGUugCUgc--UCCGGGUCUU-------GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 108498 0.67 0.883367
Target:  5'- gGCCucCGACGAGGUCCucuuccucgcgagcuGAACGgccAGGg -3'
miRNA:   3'- -CGGuuGCUGCUCCGGGu--------------CUUGC---UCCa -5'
29071 3' -56.3 NC_006146.1 + 128811 0.67 0.882679
Target:  5'- cGCCGuccgcgaaggACGGCGcGGUCCAGGAgcAGGUa -3'
miRNA:   3'- -CGGU----------UGCUGCuCCGGGUCUUgcUCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.