miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 15058 0.67 0.882679
Target:  5'- gGCCuGCGAgGAGGCaCU--GGCGGGGg -3'
miRNA:   3'- -CGGuUGCUgCUCCG-GGucUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 128811 0.67 0.882679
Target:  5'- cGCCGuccgcgaaggACGGCGcGGUCCAGGAgcAGGUa -3'
miRNA:   3'- -CGGU----------UGCUGCuCCGGGUCUUgcUCCA- -5'
29071 3' -56.3 NC_006146.1 + 3994 0.67 0.882679
Target:  5'- gGCCAugGuCGAGGCgCugauGAACGcGGc -3'
miRNA:   3'- -CGGUugCuGCUCCGgGu---CUUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 57398 0.67 0.882679
Target:  5'- --gAAUGGCGGccauGGCCCccuccuggaugaAGAGCGAGGUg -3'
miRNA:   3'- cggUUGCUGCU----CCGGG------------UCUUGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 51967 0.67 0.882679
Target:  5'- cGCCGACGGgGAGGUcuCCGGcauGCGGGc- -3'
miRNA:   3'- -CGGUUGCUgCUCCG--GGUCu--UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 60614 0.67 0.881989
Target:  5'- cGCCuACGcCGAGGCCaucauggCAG-ACGGGGc -3'
miRNA:   3'- -CGGuUGCuGCUCCGG-------GUCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 153768 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 147613 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 141457 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 81644 0.67 0.875683
Target:  5'- uGCCGggACGuuGGGGCUCGGAGggugcCGGGGa -3'
miRNA:   3'- -CGGU--UGCugCUCCGGGUCUU-----GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 156846 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 55368 0.67 0.875683
Target:  5'- cGCCAccGCGcGCGGGacGCCCGGGGCaccGAGGc -3'
miRNA:   3'- -CGGU--UGC-UGCUC--CGGGUCUUG---CUCCa -5'
29071 3' -56.3 NC_006146.1 + 93712 0.67 0.875683
Target:  5'- gGCCGugGAgaCGAGGCUCAucG-GAGGUg -3'
miRNA:   3'- -CGGUugCU--GCUCCGGGUcuUgCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 54703 0.67 0.875683
Target:  5'- aGCUcgagggGACGGCG-GGCCCGGGucagggcggcCGAGGg -3'
miRNA:   3'- -CGG------UUGCUGCuCCGGGUCUu---------GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 127066 0.67 0.875683
Target:  5'- aGCUGGCGGCGcgggaagccgaaAGGgCCAGGGCGGagcGGUg -3'
miRNA:   3'- -CGGUUGCUGC------------UCCgGGUCUUGCU---CCA- -5'
29071 3' -56.3 NC_006146.1 + 144535 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 68869 0.67 0.868477
Target:  5'- gGCUGGCGACagccuGGCCCuGAugGAGa- -3'
miRNA:   3'- -CGGUUGCUGcu---CCGGGuCUugCUCca -5'
29071 3' -56.3 NC_006146.1 + 170353 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 76277 0.67 0.868477
Target:  5'- aUCAugGACccGGCCCAGuACGuGGg -3'
miRNA:   3'- cGGUugCUGcuCCGGGUCuUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 50029 0.67 0.868477
Target:  5'- aGCCGGgGuCGAGGCgCAGgAGgGAGGc -3'
miRNA:   3'- -CGGUUgCuGCUCCGgGUC-UUgCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.