miRNA display CGI


Results 61 - 80 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 167558 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 168490 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 169422 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 50029 0.67 0.868477
Target:  5'- aGCCGGgGuCGAGGCgCAGgAGgGAGGc -3'
miRNA:   3'- -CGGUUgCuGCUCCGgGUC-UUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 76277 0.67 0.868477
Target:  5'- aUCAugGACccGGCCCAGuACGuGGg -3'
miRNA:   3'- cGGUugCUGcuCCGGGUCuUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 41053 0.68 0.861064
Target:  5'- -gCGGCGGCccugGGGGCCUcgGGGugGAGGg -3'
miRNA:   3'- cgGUUGCUG----CUCCGGG--UCUugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 51576 0.68 0.861064
Target:  5'- cGCCGcCGGgaGGGGCCCGGGGgagccaGAGGg -3'
miRNA:   3'- -CGGUuGCUg-CUCCGGGUCUUg-----CUCCa -5'
29071 3' -56.3 NC_006146.1 + 11877 0.68 0.860312
Target:  5'- cCCGACGuugacuggcaccaACGGGGCCCGGcaacuACGcGGUg -3'
miRNA:   3'- cGGUUGC-------------UGCUCCGGGUCu----UGCuCCA- -5'
29071 3' -56.3 NC_006146.1 + 122495 0.68 0.853452
Target:  5'- -aCGGCGGCGGGGUCgAGAGaaugGAGGc -3'
miRNA:   3'- cgGUUGCUGCUCCGGgUCUUg---CUCCa -5'
29071 3' -56.3 NC_006146.1 + 62376 0.68 0.853452
Target:  5'- -aCGAgGACGGGGCCuCGGccUGGGGUa -3'
miRNA:   3'- cgGUUgCUGCUCCGG-GUCuuGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 51198 0.68 0.84879
Target:  5'- gGCUGGCGugguacagggcauccACGAGGCCgGGGugGcGGGUg -3'
miRNA:   3'- -CGGUUGC---------------UGCUCCGGgUCUugC-UCCA- -5'
29071 3' -56.3 NC_006146.1 + 150691 0.68 0.845644
Target:  5'- gGCCAggGgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU--UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 16448 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 49466 0.68 0.845644
Target:  5'- aGCCAGCGAgaugauCGGGGCCCuGAuguuGGUc -3'
miRNA:   3'- -CGGUUGCU------GCUCCGGGuCUugcuCCA- -5'
29071 3' -56.3 NC_006146.1 + 13370 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 25682 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 28760 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 125929 0.68 0.845644
Target:  5'- cGUCGGCGcACGAGGUCUugcGGAGCcAGGa -3'
miRNA:   3'- -CGGUUGC-UGCUCCGGG---UCUUGcUCCa -5'
29071 3' -56.3 NC_006146.1 + 19526 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 22604 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.