miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 3887 0.74 0.501827
Target:  5'- gGUCu-CGGCGAGGCCCAccGACGAGGc -3'
miRNA:   3'- -CGGuuGCUGCUCCGGGUc-UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 3994 0.67 0.882679
Target:  5'- gGCCAugGuCGAGGCgCugauGAACGcGGc -3'
miRNA:   3'- -CGGUugCuGCUCCGgGu---CUUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 4673 0.66 0.902355
Target:  5'- gGCCggGugGGCGAGGCgggggcagaUCAGAuguuUGAGGUg -3'
miRNA:   3'- -CGG--UugCUGCUCCG---------GGUCUu---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 10667 0.72 0.630261
Target:  5'- --gGACGGgGAGGCCCGGGGCGAu-- -3'
miRNA:   3'- cggUUGCUgCUCCGGGUCUUGCUcca -5'
29071 3' -56.3 NC_006146.1 + 11016 0.71 0.690483
Target:  5'- cCCGGCcuCGAGGCCCucuGCGAGGa -3'
miRNA:   3'- cGGUUGcuGCUCCGGGucuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 11877 0.68 0.860312
Target:  5'- cCCGACGuugacuggcaccaACGGGGCCCGGcaacuACGcGGUg -3'
miRNA:   3'- cGGUUGC-------------UGCUCCGGGUCu----UGCuCCA- -5'
29071 3' -56.3 NC_006146.1 + 12730 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 12841 0.71 0.660472
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GG-UCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 13113 0.69 0.812605
Target:  5'- gGCCcuguuuGugGACGGGGgcuCCCGGGcccACGAGGa -3'
miRNA:   3'- -CGG------UugCUGCUCC---GGGUCU---UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 13370 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 14734 0.7 0.720069
Target:  5'- aGCCggUcuCGGGGCUCuuugAGAACGAGGUc -3'
miRNA:   3'- -CGGuuGcuGCUCCGGG----UCUUGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 15058 0.67 0.882679
Target:  5'- gGCCuGCGAgGAGGCaCU--GGCGGGGg -3'
miRNA:   3'- -CGGuUGCUgCUCCG-GGucUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 15274 0.66 0.914348
Target:  5'- gGCCAugcaGCGGCuGAa--CCGGAGCGAGGg -3'
miRNA:   3'- -CGGU----UGCUG-CUccgGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 15809 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 15920 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 16448 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 16696 0.68 0.821122
Target:  5'- cGCCAGCcaGACGcAGGUCCAcGAcgcccCGGGGUg -3'
miRNA:   3'- -CGGUUG--CUGC-UCCGGGU-CUu----GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 18887 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 18997 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 19526 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.