miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 20903 0.66 0.930609
Target:  5'- gGCCuuCGugGAGGCCCuGAGucCGGc-- -3'
miRNA:   3'- -CGGuuGCugCUCCGGGuCUU--GCUcca -5'
29071 3' -56.3 NC_006146.1 + 21964 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 22075 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 22604 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 25042 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 25153 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 25682 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 26127 0.66 0.907865
Target:  5'- uCCAugGAaaggcacCGGGGCCCGGucggaaagagcACGGGGg -3'
miRNA:   3'- cGGUugCU-------GCUCCGGGUCu----------UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 28074 0.75 0.452626
Target:  5'- cGCCAugGGCuucggggcauucuuGAGGCCCGGGugGGGa- -3'
miRNA:   3'- -CGGUugCUG--------------CUCCGGGUCUugCUCca -5'
29071 3' -56.3 NC_006146.1 + 28120 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 28231 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 28760 0.68 0.845644
Target:  5'- aGCCGcccuCGGGGCCCAGGGCcccuaguccaGAGGa -3'
miRNA:   3'- -CGGUugcuGCUCCGGGUCUUG----------CUCCa -5'
29071 3' -56.3 NC_006146.1 + 32008 0.69 0.767798
Target:  5'- cGCUagGAgGACagaGGGGCCuCGGGACGAGGc -3'
miRNA:   3'- -CGG--UUgCUG---CUCCGG-GUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 33031 0.73 0.580032
Target:  5'- uGCCGGCccggGGCGGGGCCCGGGACa---- -3'
miRNA:   3'- -CGGUUG----CUGCUCCGGGUCUUGcucca -5'
29071 3' -56.3 NC_006146.1 + 33150 0.66 0.919445
Target:  5'- aCCAGCgGACGAGcggacccccaggaGCuCCAGAACcGGGUa -3'
miRNA:   3'- cGGUUG-CUGCUC-------------CG-GGUCUUGcUCCA- -5'
29071 3' -56.3 NC_006146.1 + 33226 0.66 0.914348
Target:  5'- aGCCGG-GAUGGGGCUgGGGuucCGGGGg -3'
miRNA:   3'- -CGGUUgCUGCUCCGGgUCUu--GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 34070 0.68 0.829473
Target:  5'- cCCGugGcACGGGGCCgGGGGuccCGGGGg -3'
miRNA:   3'- cGGUugC-UGCUCCGGgUCUU---GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 39045 0.66 0.92
Target:  5'- gGCCAGCaGGCaGGGGCCCuguGAAUGGu-- -3'
miRNA:   3'- -CGGUUG-CUG-CUCCGGGu--CUUGCUcca -5'
29071 3' -56.3 NC_006146.1 + 41032 0.67 0.88879
Target:  5'- aGCCGugGGaggaGGGCCUAGGAcagcuucCGAGGg -3'
miRNA:   3'- -CGGUugCUgc--UCCGGGUCUU-------GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 41053 0.68 0.861064
Target:  5'- -gCGGCGGCccugGGGGCCUcgGGGugGAGGg -3'
miRNA:   3'- cgGUUGCUG----CUCCGGG--UCUugCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.