miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 41592 0.68 0.821122
Target:  5'- gGCCGagGCGGaGAGGCCCGGGGgGcuGGUc -3'
miRNA:   3'- -CGGU--UGCUgCUCCGGGUCUUgCu-CCA- -5'
29071 3' -56.3 NC_006146.1 + 41856 0.69 0.803929
Target:  5'- cGCCGGCGuCuGGGCCCAGcuCGGGc- -3'
miRNA:   3'- -CGGUUGCuGcUCCGGGUCuuGCUCca -5'
29071 3' -56.3 NC_006146.1 + 42241 0.66 0.92
Target:  5'- uGCCAACGACccccUCCGGcGCGAGGa -3'
miRNA:   3'- -CGGUUGCUGcuccGGGUCuUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 42956 0.69 0.783415
Target:  5'- uCCcGCGACGAGGCCCAuccucucuccuccuGuuuaGAGGUa -3'
miRNA:   3'- cGGuUGCUGCUCCGGGU--------------Cuug-CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 43503 0.8 0.234945
Target:  5'- uCCGGCGGCGGGGCCCAGccccaagacaccuccACGAGGg -3'
miRNA:   3'- cGGUUGCUGCUCCGGGUCu--------------UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 44755 0.73 0.580032
Target:  5'- gGCUGugGuuguCGGGGCCCGGcgGGCGGGGa -3'
miRNA:   3'- -CGGUugCu---GCUCCGGGUC--UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 44946 0.66 0.914348
Target:  5'- gGCCAggggcGCGGgGAGGCCC----CGGGGg -3'
miRNA:   3'- -CGGU-----UGCUgCUCCGGGucuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 45417 0.73 0.560147
Target:  5'- gGCCAGCG-CGAGGCCCcGGcCG-GGUu -3'
miRNA:   3'- -CGGUUGCuGCUCCGGGuCUuGCuCCA- -5'
29071 3' -56.3 NC_006146.1 + 46038 0.67 0.889458
Target:  5'- --aGGCGACGGGGCCCucca-GGGGa -3'
miRNA:   3'- cggUUGCUGCUCCGGGucuugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 46405 0.69 0.803929
Target:  5'- gGCCGA-GACcAGGCCgagucccgcgUAGAACGAGGg -3'
miRNA:   3'- -CGGUUgCUGcUCCGG----------GUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 47252 0.77 0.346572
Target:  5'- gGUCGACGugGccccuGGCCCGGGugACGAGGUc -3'
miRNA:   3'- -CGGUUGCugCu----CCGGGUCU--UGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 47652 0.66 0.92542
Target:  5'- gGCC-GCGGCccGGCCCAGcGCGGcGGc -3'
miRNA:   3'- -CGGuUGCUGcuCCGGGUCuUGCU-CCa -5'
29071 3' -56.3 NC_006146.1 + 49466 0.68 0.845644
Target:  5'- aGCCAGCGAgaugauCGGGGCCCuGAuguuGGUc -3'
miRNA:   3'- -CGGUUGCU------GCUCCGGGuCUugcuCCA- -5'
29071 3' -56.3 NC_006146.1 + 49575 0.7 0.758452
Target:  5'- cCCAGCGcUGAGG-CCAGggUGGGGc -3'
miRNA:   3'- cGGUUGCuGCUCCgGGUCuuGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 50029 0.67 0.868477
Target:  5'- aGCCGGgGuCGAGGCgCAGgAGgGAGGc -3'
miRNA:   3'- -CGGUUgCuGCUCCGgGUC-UUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 50152 0.69 0.812605
Target:  5'- cGCCAGCGcuCGucGUCCAGGACcAGGg -3'
miRNA:   3'- -CGGUUGCu-GCucCGGGUCUUGcUCCa -5'
29071 3' -56.3 NC_006146.1 + 50716 0.72 0.630261
Target:  5'- gGCCGGgucauaGACGAgGGCCCGGu-CGGGGUa -3'
miRNA:   3'- -CGGUUg-----CUGCU-CCGGGUCuuGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 50722 0.69 0.803053
Target:  5'- aGCCGgcguugagcggggGCGACGGGGCgUCGGGAaGGGGg -3'
miRNA:   3'- -CGGU-------------UGCUGCUCCG-GGUCUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 51198 0.68 0.84879
Target:  5'- gGCUGGCGugguacagggcauccACGAGGCCgGGGugGcGGGUg -3'
miRNA:   3'- -CGGUUGC---------------UGCUCCGGgUCUugC-UCCA- -5'
29071 3' -56.3 NC_006146.1 + 51576 0.68 0.861064
Target:  5'- cGCCGcCGGgaGGGGCCCGGGGgagccaGAGGg -3'
miRNA:   3'- -CGGUuGCUg-CUCCGGGUCUUg-----CUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.