miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 170518 0.67 0.889458
Target:  5'- cGCgCGGCgGGCGGGGCCUgagGGGGCGcGGc -3'
miRNA:   3'- -CG-GUUG-CUGCUCCGGG---UCUUGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 170353 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 170218 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 170190 0.66 0.914348
Target:  5'- cCCGAgGGCGGGGCCgGGGccugGCGGGn- -3'
miRNA:   3'- cGGUUgCUGCUCCGGgUCU----UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 170156 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 169422 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 169287 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 169259 0.66 0.914348
Target:  5'- cCCGAgGGCGGGGCCgGGGccugGCGGGn- -3'
miRNA:   3'- cGGUUgCUGCUCCGGgUCU----UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 169225 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 168490 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 168355 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 168327 0.66 0.914348
Target:  5'- cCCGAgGGCGGGGCCgGGGccugGCGGGn- -3'
miRNA:   3'- cGGUUgCUGCUCCGGgUCU----UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 168293 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 167558 0.67 0.868477
Target:  5'- gGCCAcguGugGAGGCCCGcGGA-GAGGc -3'
miRNA:   3'- -CGGUug-CugCUCCGGGU-CUUgCUCCa -5'
29071 3' -56.3 NC_006146.1 + 167423 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 167395 0.66 0.914348
Target:  5'- cCCGAgGGCGGGGCCgGGGccugGCGGGn- -3'
miRNA:   3'- cGGUUgCUGCUCCGGgUCU----UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 167361 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 166826 0.68 0.829473
Target:  5'- uGCUGuCGACGcGGCCCGGGuccGCGuGGa -3'
miRNA:   3'- -CGGUuGCUGCuCCGGGUCU---UGCuCCa -5'
29071 3' -56.3 NC_006146.1 + 161758 0.66 0.902355
Target:  5'- gGCUGAggucCGAgGGGGCgCCuGGGCGGGGg -3'
miRNA:   3'- -CGGUU----GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 159896 0.7 0.758452
Target:  5'- gGCCu-CGAggcCGGGGCCCucgaAGAugGGGGg -3'
miRNA:   3'- -CGGuuGCU---GCUCCGGG----UCUugCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.