miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 159239 0.71 0.710268
Target:  5'- gGCCGcAUGGCGAGGaCCCcGcAAUGAGGa -3'
miRNA:   3'- -CGGU-UGCUGCUCC-GGGuC-UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 158554 0.76 0.428592
Target:  5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3'
miRNA:   3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 157692 0.8 0.245816
Target:  5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3'
miRNA:   3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 156846 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 155941 0.74 0.521001
Target:  5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3'
miRNA:   3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5'
29071 3' -56.3 NC_006146.1 + 155475 0.76 0.428592
Target:  5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3'
miRNA:   3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 154615 0.8 0.245816
Target:  5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3'
miRNA:   3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 153768 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 152863 0.74 0.521001
Target:  5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3'
miRNA:   3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5'
29071 3' -56.3 NC_006146.1 + 152397 0.76 0.428592
Target:  5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3'
miRNA:   3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 151537 0.8 0.245816
Target:  5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3'
miRNA:   3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 150691 0.68 0.845644
Target:  5'- gGCCAggGgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU--UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 149785 0.74 0.521001
Target:  5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3'
miRNA:   3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5'
29071 3' -56.3 NC_006146.1 + 149319 0.76 0.428592
Target:  5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3'
miRNA:   3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 148459 0.8 0.245816
Target:  5'- aGCCAGCGGCugaacccgagGAGgcGCCCGGAGCGAGGc -3'
miRNA:   3'- -CGGUUGCUG----------CUC--CGGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 148039 0.69 0.795102
Target:  5'- aUCGGCGuuGGGGCCCAuGAugAUGAGGa -3'
miRNA:   3'- cGGUUGCugCUCCGGGU-CU--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 147712 0.71 0.660472
Target:  5'- gGCCAggaagGCGGCGGGGCCUGGGuaauagcgggccGCGAGcGa -3'
miRNA:   3'- -CGGU-----UGCUGCUCCGGGUCU------------UGCUC-Ca -5'
29071 3' -56.3 NC_006146.1 + 147613 0.67 0.875683
Target:  5'- gGCCAgggAgGACGgaGGGCCUGGccuGCGGGGg -3'
miRNA:   3'- -CGGU---UgCUGC--UCCGGGUCu--UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 146707 0.74 0.521001
Target:  5'- aGCCGGCGAUGAcgguggagguGGCCCcGGGCGcAGGg -3'
miRNA:   3'- -CGGUUGCUGCU----------CCGGGuCUUGC-UCCa -5'
29071 3' -56.3 NC_006146.1 + 146241 0.76 0.428592
Target:  5'- cGCgGAgGGCcuGAGGCCCAgGGGCGAGGg -3'
miRNA:   3'- -CGgUUgCUG--CUCCGGGU-CUUGCUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.