miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 101590 1.09 0.003419
Target:  5'- aGCCAACGACGAGGCCCAGAACGAGGUc -3'
miRNA:   3'- -CGGUUGCUGCUCCGGGUCUUGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 22075 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 25153 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 56302 0.66 0.9301
Target:  5'- cGCCGccuCGAgGuGGCCCAGGccguagcugcgccGCGAGa- -3'
miRNA:   3'- -CGGUu--GCUgCuCCGGGUCU-------------UGCUCca -5'
29071 3' -56.3 NC_006146.1 + 170218 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 43503 0.8 0.234945
Target:  5'- uCCGGCGGCGGGGCCCAGccccaagacaccuccACGAGGg -3'
miRNA:   3'- cGGUUGCUGCUCCGGGUCu--------------UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 3887 0.74 0.501827
Target:  5'- gGUCu-CGGCGAGGCCCAccGACGAGGc -3'
miRNA:   3'- -CGGuuGCUGCUCCGGGUc-UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 99375 0.74 0.501827
Target:  5'- gGCCGcGCGuuGAGGCCCAgGAGCGAGu- -3'
miRNA:   3'- -CGGU-UGCugCUCCGGGU-CUUGCUCca -5'
29071 3' -56.3 NC_006146.1 + 12730 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 21964 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 15920 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 44755 0.73 0.580032
Target:  5'- gGCUGugGuuguCGGGGCCCGGcgGGCGGGGa -3'
miRNA:   3'- -CGGUugCu---GCUCCGGGUC--UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 167423 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 18887 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 168355 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 45417 0.73 0.560147
Target:  5'- gGCCAGCG-CGAGGCCCcGGcCG-GGUu -3'
miRNA:   3'- -CGGUUGCuGCUCCGGGuCUuGCuCCA- -5'
29071 3' -56.3 NC_006146.1 + 18997 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 25042 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 169287 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 47252 0.77 0.346572
Target:  5'- gGUCGACGugGccccuGGCCCGGGugACGAGGUc -3'
miRNA:   3'- -CGGUUGCugCu----CCGGGUCU--UGCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.