miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 3' -56.3 NC_006146.1 + 89795 0.72 0.610115
Target:  5'- gGCCGugGACGAGGacgaggCAGAGgCGGGGg -3'
miRNA:   3'- -CGGUugCUGCUCCgg----GUCUU-GCUCCa -5'
29071 3' -56.3 NC_006146.1 + 25153 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 44755 0.73 0.580032
Target:  5'- gGCUGugGuuguCGGGGCCCGGcgGGCGGGGa -3'
miRNA:   3'- -CGGUugCu---GCUCCGGGUC--UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 169287 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 159896 0.7 0.758452
Target:  5'- gGCCu-CGAggcCGGGGCCCucgaAGAugGGGGg -3'
miRNA:   3'- -CGGuuGCU---GCUCCGGG----UCUugCUCCa -5'
29071 3' -56.3 NC_006146.1 + 53328 0.71 0.710268
Target:  5'- aGCC--CGAgGAGGCCCGGcggccGCGGGGc -3'
miRNA:   3'- -CGGuuGCUgCUCCGGGUCu----UGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 22075 0.73 0.600062
Target:  5'- gGCCGGaccCGAgGAGGCgCCuGGGCGAGGc -3'
miRNA:   3'- -CGGUU---GCUgCUCCG-GGuCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 168355 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 147712 0.71 0.660472
Target:  5'- gGCCAggaagGCGGCGGGGCCUGGGuaauagcgggccGCGAGcGa -3'
miRNA:   3'- -CGGU-----UGCUGCUCCGGGUCU------------UGCUC-Ca -5'
29071 3' -56.3 NC_006146.1 + 167423 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 25042 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 50716 0.72 0.630261
Target:  5'- gGCCGGgucauaGACGAgGGCCCGGu-CGGGGUa -3'
miRNA:   3'- -CGGUUg-----CUGCU-CCGGGUCuuGCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 18887 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 12730 0.73 0.600062
Target:  5'- gGCCAGCaaGCGAGaccaGCCCAGAGgccCGAGGUu -3'
miRNA:   3'- -CGGUUGc-UGCUC----CGGGUCUU---GCUCCA- -5'
29071 3' -56.3 NC_006146.1 + 3887 0.74 0.501827
Target:  5'- gGUCu-CGGCGAGGCCCAccGACGAGGc -3'
miRNA:   3'- -CGGuuGCUGCUCCGGGUc-UUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 170218 0.86 0.113661
Target:  5'- gGCCAGCG-CGGGGuCCCGGGGCGGGGg -3'
miRNA:   3'- -CGGUUGCuGCUCC-GGGUCUUGCUCCa -5'
29071 3' -56.3 NC_006146.1 + 50152 0.69 0.812605
Target:  5'- cGCCAGCGcuCGucGUCCAGGACcAGGg -3'
miRNA:   3'- -CGGUUGCu-GCucCGGGUCUUGcUCCa -5'
29071 3' -56.3 NC_006146.1 + 42956 0.69 0.783415
Target:  5'- uCCcGCGACGAGGCCCAuccucucuccuccuGuuuaGAGGUa -3'
miRNA:   3'- cGGuUGCUGCUCCGGGU--------------Cuug-CUCCA- -5'
29071 3' -56.3 NC_006146.1 + 170156 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5'
29071 3' -56.3 NC_006146.1 + 167361 0.71 0.710268
Target:  5'- cGCgCGGCGGCGccGGCCgGGGGCuGAGGg -3'
miRNA:   3'- -CG-GUUGCUGCu-CCGGgUCUUG-CUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.