miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 119923 0.65 0.821758
Target:  5'- --uUGCGGUcaguguuGGCAGCGGCgcugcUGCCGgaggUCu -3'
miRNA:   3'- aauGCGCCA-------CCGUUGCCG-----GCGGCa---AG- -5'
29071 5' -58.8 NC_006146.1 + 166781 0.66 0.814116
Target:  5'- -cACGCGcGUaGUcGCuGGCCGCCGUcaUCa -3'
miRNA:   3'- aaUGCGC-CAcCGuUG-CCGGCGGCA--AG- -5'
29071 5' -58.8 NC_006146.1 + 170156 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 169225 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 168293 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 167361 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 146225 0.66 0.814116
Target:  5'- ---aGCGGcGGCcAUGGCUGCaGUUCu -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGGCGgCAAG- -5'
29071 5' -58.8 NC_006146.1 + 50397 0.66 0.814116
Target:  5'- -cACGCGGcucGCGuccuCGGCCGCCa--- -3'
miRNA:   3'- aaUGCGCCac-CGUu---GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 123925 0.66 0.814116
Target:  5'- -gGCGCaauuccUGGCGGCGGCCggGCCGg-- -3'
miRNA:   3'- aaUGCGcc----ACCGUUGCCGG--CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 44219 0.66 0.814116
Target:  5'- uUUGCGCGuUGGCAGCGuuGCUcaugGCCGUc- -3'
miRNA:   3'- -AAUGCGCcACCGUUGC--CGG----CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 120807 0.66 0.814116
Target:  5'- -cGCGUGGccGGacaAGCggGGCCGCCGUg- -3'
miRNA:   3'- aaUGCGCCa-CCg--UUG--CCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 149656 0.66 0.791332
Target:  5'- -cACGCGccGGCAGCGcGCCugcacgaacuugcagGCCGUUUu -3'
miRNA:   3'- aaUGCGCcaCCGUUGC-CGG---------------CGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 11911 0.66 0.78864
Target:  5'- cUACGCGGUGGagcaccuggucuuuGCGGCCuCC-UUCu -3'
miRNA:   3'- aAUGCGCCACCgu------------UGCCGGcGGcAAG- -5'
29071 5' -58.8 NC_006146.1 + 34922 0.66 0.78774
Target:  5'- -gGCaGCGGaccGGCAGCGGCCcgGCCa--- -3'
miRNA:   3'- aaUG-CGCCa--CCGUUGCCGG--CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 55198 0.66 0.78774
Target:  5'- --cCGCGGcgGGCGAgcgucuccuguCGGCCGCCu--- -3'
miRNA:   3'- aauGCGCCa-CCGUU-----------GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 95345 0.66 0.78774
Target:  5'- uUUGCGCGGccacGGUugUGGCCcCCGUUa -3'
miRNA:   3'- -AAUGCGCCa---CCGuuGCCGGcGGCAAg -5'
29071 5' -58.8 NC_006146.1 + 130286 0.66 0.778666
Target:  5'- -aACGCGGgagaaGCAGCGGCgGCaugcggagGUUCg -3'
miRNA:   3'- aaUGCGCCac---CGUUGCCGgCGg-------CAAG- -5'
29071 5' -58.8 NC_006146.1 + 137531 0.66 0.778666
Target:  5'- ---aGCGG-GGCAGCGGcCCGgCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCC-GGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 54609 0.66 0.778666
Target:  5'- --cCGCGGgGGCGccaucCGGCCGCCucUCu -3'
miRNA:   3'- aauGCGCCaCCGUu----GCCGGCGGcaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.