miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 101624 1.07 0.002052
Target:  5'- uUUACGCGGUGGCAACGGCCGCCGUUCg -3'
miRNA:   3'- -AAUGCGCCACCGUUGCCGGCGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 53026 0.81 0.12674
Target:  5'- -cACGCGGcUGGCcGCGGCCGCCGc-- -3'
miRNA:   3'- aaUGCGCC-ACCGuUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 41461 0.76 0.29093
Target:  5'- aUUGCgGCGGUGGCAGCGGCgGUgaUGUUg -3'
miRNA:   3'- -AAUG-CGCCACCGUUGCCGgCG--GCAAg -5'
29071 5' -58.8 NC_006146.1 + 44737 0.74 0.363698
Target:  5'- -gAUGCGGUGGCcgcgGGCGGCUGUgGUUg -3'
miRNA:   3'- aaUGCGCCACCG----UUGCCGGCGgCAAg -5'
29071 5' -58.8 NC_006146.1 + 56368 0.74 0.363698
Target:  5'- -gGCGUGGUGGCGgagcACcGCCGCCGg-- -3'
miRNA:   3'- aaUGCGCCACCGU----UGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 127424 0.73 0.404533
Target:  5'- -aGC-CGGUGuCAACGGCCGCCGa-- -3'
miRNA:   3'- aaUGcGCCACcGUUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 30342 0.73 0.412185
Target:  5'- -cACGCGGUGGCAGCcuaugacgaauugGGgUGCCGUc- -3'
miRNA:   3'- aaUGCGCCACCGUUG-------------CCgGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 115129 0.71 0.483903
Target:  5'- -aGCGUGGUGGCcuCGcugccccuggcccGCCGCCGggCg -3'
miRNA:   3'- aaUGCGCCACCGuuGC-------------CGGCGGCaaG- -5'
29071 5' -58.8 NC_006146.1 + 98685 0.71 0.494236
Target:  5'- -cGCGCaGUGGguGgGGCCGCUGgUCu -3'
miRNA:   3'- aaUGCGcCACCguUgCCGGCGGCaAG- -5'
29071 5' -58.8 NC_006146.1 + 54953 0.71 0.503716
Target:  5'- --cCGCGG-GGCGACcGCCGCCGc-- -3'
miRNA:   3'- aauGCGCCaCCGUUGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 103106 0.71 0.513275
Target:  5'- -gAgGCGG-GGCAGagccUGGCCGCCGUc- -3'
miRNA:   3'- aaUgCGCCaCCGUU----GCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 44693 0.71 0.532607
Target:  5'- aUGC-CGGUguGGCGGCGGUgGCCGUg- -3'
miRNA:   3'- aAUGcGCCA--CCGUUGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 115548 0.71 0.532607
Target:  5'- -cGCGCGGUGGCGGgGGCUGgaGg-- -3'
miRNA:   3'- aaUGCGCCACCGUUgCCGGCggCaag -5'
29071 5' -58.8 NC_006146.1 + 151175 0.7 0.542372
Target:  5'- -gAUGCGGcGGUAGCGGCCgGCCu--- -3'
miRNA:   3'- aaUGCGCCaCCGUUGCCGG-CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 115949 0.7 0.552195
Target:  5'- ---aGCGGcGGCGGCGGUCGCCc--- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 10282 0.69 0.612035
Target:  5'- gUACGCGGagcUGGCAugccagGCGGCCGaCCu--- -3'
miRNA:   3'- aAUGCGCC---ACCGU------UGCCGGC-GGcaag -5'
29071 5' -58.8 NC_006146.1 + 40431 0.69 0.612035
Target:  5'- --cCGgGGcGGCAGCGGCC-CCGUa- -3'
miRNA:   3'- aauGCgCCaCCGUUGCCGGcGGCAag -5'
29071 5' -58.8 NC_006146.1 + 50232 0.69 0.629149
Target:  5'- -cGCGagauGGUGGCggUGGCUGCCuugaaccaggacacGUUCa -3'
miRNA:   3'- aaUGCg---CCACCGuuGCCGGCGG--------------CAAG- -5'
29071 5' -58.8 NC_006146.1 + 115185 0.69 0.630156
Target:  5'- gUACGCGGaggccagcggcgGGCAgagccccccgGCGGCgGCCGUg- -3'
miRNA:   3'- aAUGCGCCa-----------CCGU----------UGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 137776 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcgaacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.