Results 21 - 40 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29071 | 5' | -58.8 | NC_006146.1 | + | 137776 | 0.69 | 0.63217 |
Target: 5'- ---aGCGG-GGCAGCGGCCcggcgaacccGCCGg-- -3' miRNA: 3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 125095 | 0.69 | 0.641235 |
Target: 5'- -gAgGCGGccgUGGCGGCGGCCuuccucgGCCGUc- -3' miRNA: 3'- aaUgCGCC---ACCGUUGCCGG-------CGGCAag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 147357 | 0.69 | 0.642241 |
Target: 5'- uUUGCGC-GUGuCGGCGGCCGCCa--- -3' miRNA: 3'- -AAUGCGcCACcGUUGCCGGCGGcaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 54054 | 0.69 | 0.642241 |
Target: 5'- ---gGCGGUGGuCAGggcccaccUGGCCGCCGcgUCc -3' miRNA: 3'- aaugCGCCACC-GUU--------GCCGGCGGCa-AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 166891 | 0.69 | 0.642241 |
Target: 5'- ---aGCGG-GGCAAaGGCCG-CGUUCa -3' miRNA: 3'- aaugCGCCaCCGUUgCCGGCgGCAAG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 43042 | 0.69 | 0.652305 |
Target: 5'- -cGCGCGGUauGGCAcgcCGGCUGCCc--- -3' miRNA: 3'- aaUGCGCCA--CCGUu--GCCGGCGGcaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 130231 | 0.68 | 0.682371 |
Target: 5'- -aGgGUGGUGGCca-GGCCGuuGUUg -3' miRNA: 3'- aaUgCGCCACCGuugCCGGCggCAAg -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 12788 | 0.68 | 0.712074 |
Target: 5'- -gACGCGGcccugcaggGGCGgacguacggacgGCGGCUGCCGg-- -3' miRNA: 3'- aaUGCGCCa--------CCGU------------UGCCGGCGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 33093 | 0.67 | 0.731561 |
Target: 5'- --cUGCGGcucuggGGCAGCcggguGGCCGCCGg-- -3' miRNA: 3'- aauGCGCCa-----CCGUUG-----CCGGCGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 131078 | 0.67 | 0.731561 |
Target: 5'- --gUGCGGccgaGGCcgccgggccgucAACGGCCGCCGUc- -3' miRNA: 3'- aauGCGCCa---CCG------------UUGCCGGCGGCAag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 118059 | 0.67 | 0.741184 |
Target: 5'- -cGgGCGGgGGCGGCGGCgGCuCGg-- -3' miRNA: 3'- aaUgCGCCaCCGUUGCCGgCG-GCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 43382 | 0.67 | 0.741184 |
Target: 5'- -aGCGgGGgcaGCAGCGGCUGCCu--- -3' miRNA: 3'- aaUGCgCCac-CGUUGCCGGCGGcaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 154671 | 0.67 | 0.750715 |
Target: 5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3' miRNA: 3'- aauGCGCCACCGUUgCCgGCGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 48248 | 0.67 | 0.750715 |
Target: 5'- -cGCGCGGagGGCccCcGCCGCCGUc- -3' miRNA: 3'- aaUGCGCCa-CCGuuGcCGGCGGCAag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 167279 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 169143 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 170075 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 168211 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 141646 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 117876 | 0.67 | 0.760144 |
Target: 5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3' miRNA: 3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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