miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 68193 0.67 0.769464
Target:  5'- -gACGCGG-GcGCAGCGGCU-CCGggaggUCa -3'
miRNA:   3'- aaUGCGCCaC-CGUUGCCGGcGGCa----AG- -5'
29071 5' -58.8 NC_006146.1 + 157035 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 153957 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 150879 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 147801 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 144723 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 167279 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 48248 0.67 0.750715
Target:  5'- -cGCGCGGagGGCccCcGCCGCCGUc- -3'
miRNA:   3'- aaUGCGCCa-CCGuuGcCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 168211 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 170075 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 154671 0.67 0.750715
Target:  5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3'
miRNA:   3'- aauGCGCCACCGUUgCCgGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 169143 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 43382 0.67 0.741184
Target:  5'- -aGCGgGGgcaGCAGCGGCUGCCu--- -3'
miRNA:   3'- aaUGCgCCac-CGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 118059 0.67 0.741184
Target:  5'- -cGgGCGGgGGCGGCGGCgGCuCGg-- -3'
miRNA:   3'- aaUgCGCCaCCGUUGCCGgCG-GCaag -5'
29071 5' -58.8 NC_006146.1 + 33093 0.67 0.731561
Target:  5'- --cUGCGGcucuggGGCAGCcggguGGCCGCCGg-- -3'
miRNA:   3'- aauGCGCCa-----CCGUUG-----CCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 131078 0.67 0.731561
Target:  5'- --gUGCGGccgaGGCcgccgggccgucAACGGCCGCCGUc- -3'
miRNA:   3'- aauGCGCCa---CCG------------UUGCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 12788 0.68 0.712074
Target:  5'- -gACGCGGcccugcaggGGCGgacguacggacgGCGGCUGCCGg-- -3'
miRNA:   3'- aaUGCGCCa--------CCGU------------UGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 130231 0.68 0.682371
Target:  5'- -aGgGUGGUGGCca-GGCCGuuGUUg -3'
miRNA:   3'- aaUgCGCCACCGuugCCGGCggCAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.