miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 10282 0.69 0.612035
Target:  5'- gUACGCGGagcUGGCAugccagGCGGCCGaCCu--- -3'
miRNA:   3'- aAUGCGCC---ACCGU------UGCCGGC-GGcaag -5'
29071 5' -58.8 NC_006146.1 + 11911 0.66 0.78864
Target:  5'- cUACGCGGUGGagcaccuggucuuuGCGGCCuCC-UUCu -3'
miRNA:   3'- aAUGCGCCACCgu------------UGCCGGcGGcAAG- -5'
29071 5' -58.8 NC_006146.1 + 12788 0.68 0.712074
Target:  5'- -gACGCGGcccugcaggGGCGgacguacggacgGCGGCUGCCGg-- -3'
miRNA:   3'- aaUGCGCCa--------CCGU------------UGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 30342 0.73 0.412185
Target:  5'- -cACGCGGUGGCAGCcuaugacgaauugGGgUGCCGUc- -3'
miRNA:   3'- aaUGCGCCACCGUUG-------------CCgGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 33093 0.67 0.731561
Target:  5'- --cUGCGGcucuggGGCAGCcggguGGCCGCCGg-- -3'
miRNA:   3'- aauGCGCCa-----CCGUUG-----CCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 34922 0.66 0.78774
Target:  5'- -gGCaGCGGaccGGCAGCGGCCcgGCCa--- -3'
miRNA:   3'- aaUG-CGCCa--CCGUUGCCGG--CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 40431 0.69 0.612035
Target:  5'- --cCGgGGcGGCAGCGGCC-CCGUa- -3'
miRNA:   3'- aauGCgCCaCCGUUGCCGGcGGCAag -5'
29071 5' -58.8 NC_006146.1 + 41461 0.76 0.29093
Target:  5'- aUUGCgGCGGUGGCAGCGGCgGUgaUGUUg -3'
miRNA:   3'- -AAUG-CGCCACCGUUGCCGgCG--GCAAg -5'
29071 5' -58.8 NC_006146.1 + 43042 0.69 0.652305
Target:  5'- -cGCGCGGUauGGCAcgcCGGCUGCCc--- -3'
miRNA:   3'- aaUGCGCCA--CCGUu--GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 43382 0.67 0.741184
Target:  5'- -aGCGgGGgcaGCAGCGGCUGCCu--- -3'
miRNA:   3'- aaUGCgCCac-CGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 44219 0.66 0.814116
Target:  5'- uUUGCGCGuUGGCAGCGuuGCUcaugGCCGUc- -3'
miRNA:   3'- -AAUGCGCcACCGUUGC--CGG----CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 44693 0.71 0.532607
Target:  5'- aUGC-CGGUguGGCGGCGGUgGCCGUg- -3'
miRNA:   3'- aAUGcGCCA--CCGUUGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 44737 0.74 0.363698
Target:  5'- -gAUGCGGUGGCcgcgGGCGGCUGUgGUUg -3'
miRNA:   3'- aaUGCGCCACCG----UUGCCGGCGgCAAg -5'
29071 5' -58.8 NC_006146.1 + 48248 0.67 0.750715
Target:  5'- -cGCGCGGagGGCccCcGCCGCCGUc- -3'
miRNA:   3'- aaUGCGCCa-CCGuuGcCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 50232 0.69 0.629149
Target:  5'- -cGCGagauGGUGGCggUGGCUGCCuugaaccaggacacGUUCa -3'
miRNA:   3'- aaUGCg---CCACCGuuGCCGGCGG--------------CAAG- -5'
29071 5' -58.8 NC_006146.1 + 50397 0.66 0.814116
Target:  5'- -cACGCGGcucGCGuccuCGGCCGCCa--- -3'
miRNA:   3'- aaUGCGCCac-CGUu---GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 53026 0.81 0.12674
Target:  5'- -cACGCGGcUGGCcGCGGCCGCCGc-- -3'
miRNA:   3'- aaUGCGCC-ACCGuUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 54054 0.69 0.642241
Target:  5'- ---gGCGGUGGuCAGggcccaccUGGCCGCCGcgUCc -3'
miRNA:   3'- aaugCGCCACC-GUU--------GCCGGCGGCa-AG- -5'
29071 5' -58.8 NC_006146.1 + 54609 0.66 0.778666
Target:  5'- --cCGCGGgGGCGccaucCGGCCGCCucUCu -3'
miRNA:   3'- aauGCGCCaCCGUu----GCCGGCGGcaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.