miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 54953 0.71 0.503716
Target:  5'- --cCGCGG-GGCGACcGCCGCCGc-- -3'
miRNA:   3'- aauGCGCCaCCGUUGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 55198 0.66 0.78774
Target:  5'- --cCGCGGcgGGCGAgcgucuccuguCGGCCGCCu--- -3'
miRNA:   3'- aauGCGCCa-CCGUU-----------GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 56368 0.74 0.363698
Target:  5'- -gGCGUGGUGGCGgagcACcGCCGCCGg-- -3'
miRNA:   3'- aaUGCGCCACCGU----UGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 68193 0.67 0.769464
Target:  5'- -gACGCGG-GcGCAGCGGCU-CCGggaggUCa -3'
miRNA:   3'- aaUGCGCCaC-CGUUGCCGGcGGCa----AG- -5'
29071 5' -58.8 NC_006146.1 + 95345 0.66 0.78774
Target:  5'- uUUGCGCGGccacGGUugUGGCCcCCGUUa -3'
miRNA:   3'- -AAUGCGCCa---CCGuuGCCGGcGGCAAg -5'
29071 5' -58.8 NC_006146.1 + 98685 0.71 0.494236
Target:  5'- -cGCGCaGUGGguGgGGCCGCUGgUCu -3'
miRNA:   3'- aaUGCGcCACCguUgCCGGCGGCaAG- -5'
29071 5' -58.8 NC_006146.1 + 101624 1.07 0.002052
Target:  5'- uUUACGCGGUGGCAACGGCCGCCGUUCg -3'
miRNA:   3'- -AAUGCGCCACCGUUGCCGGCGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 103106 0.71 0.513275
Target:  5'- -gAgGCGG-GGCAGagccUGGCCGCCGUc- -3'
miRNA:   3'- aaUgCGCCaCCGUU----GCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 115129 0.71 0.483903
Target:  5'- -aGCGUGGUGGCcuCGcugccccuggcccGCCGCCGggCg -3'
miRNA:   3'- aaUGCGCCACCGuuGC-------------CGGCGGCaaG- -5'
29071 5' -58.8 NC_006146.1 + 115185 0.69 0.630156
Target:  5'- gUACGCGGaggccagcggcgGGCAgagccccccgGCGGCgGCCGUg- -3'
miRNA:   3'- aAUGCGCCa-----------CCGU----------UGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 115548 0.71 0.532607
Target:  5'- -cGCGCGGUGGCGGgGGCUGgaGg-- -3'
miRNA:   3'- aaUGCGCCACCGUUgCCGGCggCaag -5'
29071 5' -58.8 NC_006146.1 + 115949 0.7 0.552195
Target:  5'- ---aGCGGcGGCGGCGGUCGCCc--- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 118059 0.67 0.741184
Target:  5'- -cGgGCGGgGGCGGCGGCgGCuCGg-- -3'
miRNA:   3'- aaUgCGCCaCCGUUGCCGgCG-GCaag -5'
29071 5' -58.8 NC_006146.1 + 119923 0.65 0.821758
Target:  5'- --uUGCGGUcaguguuGGCAGCGGCgcugcUGCCGgaggUCu -3'
miRNA:   3'- aauGCGCCA-------CCGUUGCCG-----GCGGCa---AG- -5'
29071 5' -58.8 NC_006146.1 + 120807 0.66 0.814116
Target:  5'- -cGCGUGGccGGacaAGCggGGCCGCCGUg- -3'
miRNA:   3'- aaUGCGCCa-CCg--UUG--CCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 123925 0.66 0.814116
Target:  5'- -gGCGCaauuccUGGCGGCGGCCggGCCGg-- -3'
miRNA:   3'- aaUGCGcc----ACCGUUGCCGG--CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 125095 0.69 0.641235
Target:  5'- -gAgGCGGccgUGGCGGCGGCCuuccucgGCCGUc- -3'
miRNA:   3'- aaUgCGCC---ACCGUUGCCGG-------CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 127424 0.73 0.404533
Target:  5'- -aGC-CGGUGuCAACGGCCGCCGa-- -3'
miRNA:   3'- aaUGcGCCACcGUUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 130231 0.68 0.682371
Target:  5'- -aGgGUGGUGGCca-GGCCGuuGUUg -3'
miRNA:   3'- aaUgCGCCACCGuugCCGGCggCAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.