miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 130286 0.66 0.778666
Target:  5'- -aACGCGGgagaaGCAGCGGCgGCaugcggagGUUCg -3'
miRNA:   3'- aaUGCGCCac---CGUUGCCGgCGg-------CAAG- -5'
29071 5' -58.8 NC_006146.1 + 131078 0.67 0.731561
Target:  5'- --gUGCGGccgaGGCcgccgggccgucAACGGCCGCCGUc- -3'
miRNA:   3'- aauGCGCCa---CCG------------UUGCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 137531 0.66 0.778666
Target:  5'- ---aGCGG-GGCAGCGGcCCGgCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCC-GGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 137653 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcggacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 137776 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcgaacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 144723 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 146225 0.66 0.814116
Target:  5'- ---aGCGGcGGCcAUGGCUGCaGUUCu -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGGCGgCAAG- -5'
29071 5' -58.8 NC_006146.1 + 147357 0.69 0.642241
Target:  5'- uUUGCGC-GUGuCGGCGGCCGCCa--- -3'
miRNA:   3'- -AAUGCGcCACcGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 147801 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 149656 0.66 0.791332
Target:  5'- -cACGCGccGGCAGCGcGCCugcacgaacuugcagGCCGUUUu -3'
miRNA:   3'- aaUGCGCcaCCGUUGC-CGG---------------CGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 150879 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 151175 0.7 0.542372
Target:  5'- -gAUGCGGcGGUAGCGGCCgGCCu--- -3'
miRNA:   3'- aaUGCGCCaCCGUUGCCGG-CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 153957 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 154671 0.67 0.750715
Target:  5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3'
miRNA:   3'- aauGCGCCACCGUUgCCgGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 157035 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 166781 0.66 0.814116
Target:  5'- -cACGCGcGUaGUcGCuGGCCGCCGUcaUCa -3'
miRNA:   3'- aaUGCGC-CAcCGuUG-CCGGCGGCA--AG- -5'
29071 5' -58.8 NC_006146.1 + 166891 0.69 0.642241
Target:  5'- ---aGCGG-GGCAAaGGCCG-CGUUCa -3'
miRNA:   3'- aaugCGCCaCCGUUgCCGGCgGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 167279 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 167361 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.