Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29071 | 5' | -58.8 | NC_006146.1 | + | 170156 | 0.66 | 0.814116 |
Target: 5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3' miRNA: 3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 170075 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 169225 | 0.66 | 0.814116 |
Target: 5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3' miRNA: 3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 169143 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 168293 | 0.66 | 0.814116 |
Target: 5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3' miRNA: 3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 168211 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 167361 | 0.66 | 0.814116 |
Target: 5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3' miRNA: 3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 167279 | 0.67 | 0.750715 |
Target: 5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3' miRNA: 3'- aauGCGC-CACCgUUGCCGGCgGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 166891 | 0.69 | 0.642241 |
Target: 5'- ---aGCGG-GGCAAaGGCCG-CGUUCa -3' miRNA: 3'- aaugCGCCaCCGUUgCCGGCgGCAAG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 166781 | 0.66 | 0.814116 |
Target: 5'- -cACGCGcGUaGUcGCuGGCCGCCGUcaUCa -3' miRNA: 3'- aaUGCGC-CAcCGuUG-CCGGCGGCA--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 157035 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 154671 | 0.67 | 0.750715 |
Target: 5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3' miRNA: 3'- aauGCGCCACCGUUgCCgGCGGCaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 153957 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 151175 | 0.7 | 0.542372 |
Target: 5'- -gAUGCGGcGGUAGCGGCCgGCCu--- -3' miRNA: 3'- aaUGCGCCaCCGUUGCCGG-CGGcaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 150879 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 149656 | 0.66 | 0.791332 |
Target: 5'- -cACGCGccGGCAGCGcGCCugcacgaacuugcagGCCGUUUu -3' miRNA: 3'- aaUGCGCcaCCGUUGC-CGG---------------CGGCAAG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 147801 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 147357 | 0.69 | 0.642241 |
Target: 5'- uUUGCGC-GUGuCGGCGGCCGCCa--- -3' miRNA: 3'- -AAUGCGcCACcGUUGCCGGCGGcaag -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 146225 | 0.66 | 0.814116 |
Target: 5'- ---aGCGGcGGCcAUGGCUGCaGUUCu -3' miRNA: 3'- aaugCGCCaCCGuUGCCGGCGgCAAG- -5' |
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29071 | 5' | -58.8 | NC_006146.1 | + | 144723 | 0.67 | 0.760144 |
Target: 5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3' miRNA: 3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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