miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 101624 1.07 0.002052
Target:  5'- uUUACGCGGUGGCAACGGCCGCCGUUCg -3'
miRNA:   3'- -AAUGCGCCACCGUUGCCGGCGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 167279 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 169143 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 119923 0.65 0.821758
Target:  5'- --uUGCGGUcaguguuGGCAGCGGCgcugcUGCCGgaggUCu -3'
miRNA:   3'- aauGCGCCA-------CCGUUGCCG-----GCGGCa---AG- -5'
29071 5' -58.8 NC_006146.1 + 30342 0.73 0.412185
Target:  5'- -cACGCGGUGGCAGCcuaugacgaauugGGgUGCCGUc- -3'
miRNA:   3'- aaUGCGCCACCGUUG-------------CCgGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 98685 0.71 0.494236
Target:  5'- -cGCGCaGUGGguGgGGCCGCUGgUCu -3'
miRNA:   3'- aaUGCGcCACCguUgCCGGCGGCaAG- -5'
29071 5' -58.8 NC_006146.1 + 44693 0.71 0.532607
Target:  5'- aUGC-CGGUguGGCGGCGGUgGCCGUg- -3'
miRNA:   3'- aAUGcGCCA--CCGUUGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 151175 0.7 0.542372
Target:  5'- -gAUGCGGcGGUAGCGGCCgGCCu--- -3'
miRNA:   3'- aaUGCGCCaCCGUUGCCGG-CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 43042 0.69 0.652305
Target:  5'- -cGCGCGGUauGGCAcgcCGGCUGCCc--- -3'
miRNA:   3'- aaUGCGCCA--CCGUu--GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 154671 0.67 0.750715
Target:  5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3'
miRNA:   3'- aauGCGCCACCGUUgCCgGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 131078 0.67 0.731561
Target:  5'- --gUGCGGccgaGGCcgccgggccgucAACGGCCGCCGUc- -3'
miRNA:   3'- aauGCGCCa---CCG------------UUGCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 147357 0.69 0.642241
Target:  5'- uUUGCGC-GUGuCGGCGGCCGCCa--- -3'
miRNA:   3'- -AAUGCGcCACcGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 53026 0.81 0.12674
Target:  5'- -cACGCGGcUGGCcGCGGCCGCCGc-- -3'
miRNA:   3'- aaUGCGCC-ACCGuUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 43382 0.67 0.741184
Target:  5'- -aGCGgGGgcaGCAGCGGCUGCCu--- -3'
miRNA:   3'- aaUGCgCCac-CGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 56368 0.74 0.363698
Target:  5'- -gGCGUGGUGGCGgagcACcGCCGCCGg-- -3'
miRNA:   3'- aaUGCGCCACCGU----UGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 54054 0.69 0.642241
Target:  5'- ---gGCGGUGGuCAGggcccaccUGGCCGCCGcgUCc -3'
miRNA:   3'- aaugCGCCACC-GUU--------GCCGGCGGCa-AG- -5'
29071 5' -58.8 NC_006146.1 + 48248 0.67 0.750715
Target:  5'- -cGCGCGGagGGCccCcGCCGCCGUc- -3'
miRNA:   3'- aaUGCGCCa-CCGuuGcCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 168211 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 44737 0.74 0.363698
Target:  5'- -gAUGCGGUGGCcgcgGGCGGCUGUgGUUg -3'
miRNA:   3'- aaUGCGCCACCG----UUGCCGGCGgCAAg -5'
29071 5' -58.8 NC_006146.1 + 54953 0.71 0.503716
Target:  5'- --cCGCGG-GGCGACcGCCGCCGc-- -3'
miRNA:   3'- aauGCGCCaCCGUUGcCGGCGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.