miRNA display CGI


Results 21 - 40 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 154671 0.67 0.750715
Target:  5'- --cCGUGGUGGCGGgGGgCGCUGc-- -3'
miRNA:   3'- aauGCGCCACCGUUgCCgGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 33093 0.67 0.731561
Target:  5'- --cUGCGGcucuggGGCAGCcggguGGCCGCCGg-- -3'
miRNA:   3'- aauGCGCCa-----CCGUUG-----CCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 146225 0.66 0.814116
Target:  5'- ---aGCGGcGGCcAUGGCUGCaGUUCu -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGGCGgCAAG- -5'
29071 5' -58.8 NC_006146.1 + 169143 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 43042 0.69 0.652305
Target:  5'- -cGCGCGGUauGGCAcgcCGGCUGCCc--- -3'
miRNA:   3'- aaUGCGCCA--CCGUu--GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 149656 0.66 0.791332
Target:  5'- -cACGCGccGGCAGCGcGCCugcacgaacuugcagGCCGUUUu -3'
miRNA:   3'- aaUGCGCcaCCGUUGC-CGG---------------CGGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 147357 0.69 0.642241
Target:  5'- uUUGCGC-GUGuCGGCGGCCGCCa--- -3'
miRNA:   3'- -AAUGCGcCACcGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 54054 0.69 0.642241
Target:  5'- ---gGCGGUGGuCAGggcccaccUGGCCGCCGcgUCc -3'
miRNA:   3'- aaugCGCCACC-GUU--------GCCGGCGGCa-AG- -5'
29071 5' -58.8 NC_006146.1 + 170075 0.67 0.750715
Target:  5'- --cCGCGcGUGGgGAUGGCCGgCGg-- -3'
miRNA:   3'- aauGCGC-CACCgUUGCCGGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 169225 0.66 0.814116
Target:  5'- -cGCGCGGcGGCGcCGGCCggggGCUGa-- -3'
miRNA:   3'- aaUGCGCCaCCGUuGCCGG----CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 48248 0.67 0.750715
Target:  5'- -cGCGCGGagGGCccCcGCCGCCGUc- -3'
miRNA:   3'- aaUGCGCCa-CCGuuGcCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 131078 0.67 0.731561
Target:  5'- --gUGCGGccgaGGCcgccgggccgucAACGGCCGCCGUc- -3'
miRNA:   3'- aauGCGCCa---CCG------------UUGCCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 54609 0.66 0.778666
Target:  5'- --cCGCGGgGGCGccaucCGGCCGCCucUCu -3'
miRNA:   3'- aauGCGCCaCCGUu----GCCGGCGGcaAG- -5'
29071 5' -58.8 NC_006146.1 + 50397 0.66 0.814116
Target:  5'- -cACGCGGcucGCGuccuCGGCCGCCa--- -3'
miRNA:   3'- aaUGCGCCac-CGUu---GCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 115129 0.71 0.483903
Target:  5'- -aGCGUGGUGGCcuCGcugccccuggcccGCCGCCGggCg -3'
miRNA:   3'- aaUGCGCCACCGuuGC-------------CGGCGGCaaG- -5'
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 115548 0.71 0.532607
Target:  5'- -cGCGCGGUGGCGGgGGCUGgaGg-- -3'
miRNA:   3'- aaUGCGCCACCGUUgCCGGCggCaag -5'
29071 5' -58.8 NC_006146.1 + 103106 0.71 0.513275
Target:  5'- -gAgGCGG-GGCAGagccUGGCCGCCGUc- -3'
miRNA:   3'- aaUgCGCCaCCGUU----GCCGGCGGCAag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.