miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 34922 0.66 0.78774
Target:  5'- -gGCaGCGGaccGGCAGCGGCCcgGCCa--- -3'
miRNA:   3'- aaUG-CGCCa--CCGUUGCCGG--CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 11911 0.66 0.78864
Target:  5'- cUACGCGGUGGagcaccuggucuuuGCGGCCuCC-UUCu -3'
miRNA:   3'- aAUGCGCCACCgu------------UGCCGGcGGcAAG- -5'
29071 5' -58.8 NC_006146.1 + 115548 0.71 0.532607
Target:  5'- -cGCGCGGUGGCGGgGGCUGgaGg-- -3'
miRNA:   3'- aaUGCGCCACCGUUgCCGGCggCaag -5'
29071 5' -58.8 NC_006146.1 + 120807 0.66 0.814116
Target:  5'- -cGCGUGGccGGacaAGCggGGCCGCCGUg- -3'
miRNA:   3'- aaUGCGCCa-CCg--UUG--CCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 115129 0.71 0.483903
Target:  5'- -aGCGUGGUGGCcuCGcugccccuggcccGCCGCCGggCg -3'
miRNA:   3'- aaUGCGCCACCGuuGC-------------CGGCGGCaaG- -5'
29071 5' -58.8 NC_006146.1 + 147801 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 144723 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 10282 0.69 0.612035
Target:  5'- gUACGCGGagcUGGCAugccagGCGGCCGaCCu--- -3'
miRNA:   3'- aAUGCGCC---ACCGU------UGCCGGC-GGcaag -5'
29071 5' -58.8 NC_006146.1 + 115185 0.69 0.630156
Target:  5'- gUACGCGGaggccagcggcgGGCAgagccccccgGCGGCgGCCGUg- -3'
miRNA:   3'- aAUGCGCCa-----------CCGU----------UGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 50232 0.69 0.629149
Target:  5'- -cGCGagauGGUGGCggUGGCUGCCuugaaccaggacacGUUCa -3'
miRNA:   3'- aaUGCg---CCACCGuuGCCGGCGG--------------CAAG- -5'
29071 5' -58.8 NC_006146.1 + 137653 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcggacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 137776 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcgaacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 125095 0.69 0.641235
Target:  5'- -gAgGCGGccgUGGCGGCGGCCuuccucgGCCGUc- -3'
miRNA:   3'- aaUgCGCC---ACCGUUGCCGG-------CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 166891 0.69 0.642241
Target:  5'- ---aGCGG-GGCAAaGGCCG-CGUUCa -3'
miRNA:   3'- aaugCGCCaCCGUUgCCGGCgGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 130231 0.68 0.682371
Target:  5'- -aGgGUGGUGGCca-GGCCGuuGUUg -3'
miRNA:   3'- aaUgCGCCACCGuugCCGGCggCAAg -5'
29071 5' -58.8 NC_006146.1 + 12788 0.68 0.712074
Target:  5'- -gACGCGGcccugcaggGGCGgacguacggacgGCGGCUGCCGg-- -3'
miRNA:   3'- aaUGCGCCa--------CCGU------------UGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 115949 0.7 0.552195
Target:  5'- ---aGCGGcGGCGGCGGUCGCCc--- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGGCGGcaag -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.