miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 137776 0.69 0.63217
Target:  5'- ---aGCGG-GGCAGCGGCCcggcgaacccGCCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCCGG----------CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 144723 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 118059 0.67 0.741184
Target:  5'- -cGgGCGGgGGCGGCGGCgGCuCGg-- -3'
miRNA:   3'- aaUgCGCCaCCGUUGCCGgCG-GCaag -5'
29071 5' -58.8 NC_006146.1 + 12788 0.68 0.712074
Target:  5'- -gACGCGGcccugcaggGGCGgacguacggacgGCGGCUGCCGg-- -3'
miRNA:   3'- aaUGCGCCa--------CCGU------------UGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 130231 0.68 0.682371
Target:  5'- -aGgGUGGUGGCca-GGCCGuuGUUg -3'
miRNA:   3'- aaUgCGCCACCGuugCCGGCggCAAg -5'
29071 5' -58.8 NC_006146.1 + 166891 0.69 0.642241
Target:  5'- ---aGCGG-GGCAAaGGCCG-CGUUCa -3'
miRNA:   3'- aaugCGCCaCCGUUgCCGGCgGCAAG- -5'
29071 5' -58.8 NC_006146.1 + 125095 0.69 0.641235
Target:  5'- -gAgGCGGccgUGGCGGCGGCCuuccucgGCCGUc- -3'
miRNA:   3'- aaUgCGCC---ACCGUUGCCGG-------CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 147801 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 150879 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 153957 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 123925 0.66 0.814116
Target:  5'- -gGCGCaauuccUGGCGGCGGCCggGCCGg-- -3'
miRNA:   3'- aaUGCGcc----ACCGUUGCCGG--CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 120807 0.66 0.814116
Target:  5'- -cGCGUGGccGGacaAGCggGGCCGCCGUg- -3'
miRNA:   3'- aaUGCGCCa-CCg--UUG--CCGGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 44219 0.66 0.814116
Target:  5'- uUUGCGCGuUGGCAGCGuuGCUcaugGCCGUc- -3'
miRNA:   3'- -AAUGCGCcACCGUUGC--CGG----CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 11911 0.66 0.78864
Target:  5'- cUACGCGGUGGagcaccuggucuuuGCGGCCuCC-UUCu -3'
miRNA:   3'- aAUGCGCCACCgu------------UGCCGGcGGcAAG- -5'
29071 5' -58.8 NC_006146.1 + 34922 0.66 0.78774
Target:  5'- -gGCaGCGGaccGGCAGCGGCCcgGCCa--- -3'
miRNA:   3'- aaUG-CGCCa--CCGUUGCCGG--CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 137531 0.66 0.778666
Target:  5'- ---aGCGG-GGCAGCGGcCCGgCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCC-GGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 157035 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.