miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29071 5' -58.8 NC_006146.1 + 44219 0.66 0.814116
Target:  5'- uUUGCGCGuUGGCAGCGuuGCUcaugGCCGUc- -3'
miRNA:   3'- -AAUGCGCcACCGUUGC--CGG----CGGCAag -5'
29071 5' -58.8 NC_006146.1 + 11911 0.66 0.78864
Target:  5'- cUACGCGGUGGagcaccuggucuuuGCGGCCuCC-UUCu -3'
miRNA:   3'- aAUGCGCCACCgu------------UGCCGGcGGcAAG- -5'
29071 5' -58.8 NC_006146.1 + 34922 0.66 0.78774
Target:  5'- -gGCaGCGGaccGGCAGCGGCCcgGCCa--- -3'
miRNA:   3'- aaUG-CGCCa--CCGUUGCCGG--CGGcaag -5'
29071 5' -58.8 NC_006146.1 + 13327 0.66 0.778666
Target:  5'- -aGgGCGGUGGaguCGGCCGCgGc-- -3'
miRNA:   3'- aaUgCGCCACCguuGCCGGCGgCaag -5'
29071 5' -58.8 NC_006146.1 + 137531 0.66 0.778666
Target:  5'- ---aGCGG-GGCAGCGGcCCGgCGg-- -3'
miRNA:   3'- aaugCGCCaCCGUUGCC-GGCgGCaag -5'
29071 5' -58.8 NC_006146.1 + 157035 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 117876 0.67 0.760144
Target:  5'- ---gGCGGcGGCcGCGGCCaGCCGc-- -3'
miRNA:   3'- aaugCGCCaCCGuUGCCGG-CGGCaag -5'
29071 5' -58.8 NC_006146.1 + 141646 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 144723 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 147801 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 150879 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 153957 0.67 0.760144
Target:  5'- cUGCGgGGgacgcUGGCAcACcgGGCCGCCGgggUCc -3'
miRNA:   3'- aAUGCgCC-----ACCGU-UG--CCGGCGGCa--AG- -5'
29071 5' -58.8 NC_006146.1 + 44693 0.71 0.532607
Target:  5'- aUGC-CGGUguGGCGGCGGUgGCCGUg- -3'
miRNA:   3'- aAUGcGCCA--CCGUUGCCGgCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 54953 0.71 0.503716
Target:  5'- --cCGCGG-GGCGACcGCCGCCGc-- -3'
miRNA:   3'- aauGCGCCaCCGUUGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 98685 0.71 0.494236
Target:  5'- -cGCGCaGUGGguGgGGCCGCUGgUCu -3'
miRNA:   3'- aaUGCGcCACCguUgCCGGCGGCaAG- -5'
29071 5' -58.8 NC_006146.1 + 30342 0.73 0.412185
Target:  5'- -cACGCGGUGGCAGCcuaugacgaauugGGgUGCCGUc- -3'
miRNA:   3'- aaUGCGCCACCGUUG-------------CCgGCGGCAag -5'
29071 5' -58.8 NC_006146.1 + 44737 0.74 0.363698
Target:  5'- -gAUGCGGUGGCcgcgGGCGGCUGUgGUUg -3'
miRNA:   3'- aaUGCGCCACCG----UUGCCGGCGgCAAg -5'
29071 5' -58.8 NC_006146.1 + 56368 0.74 0.363698
Target:  5'- -gGCGUGGUGGCGgagcACcGCCGCCGg-- -3'
miRNA:   3'- aaUGCGCCACCGU----UGcCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 53026 0.81 0.12674
Target:  5'- -cACGCGGcUGGCcGCGGCCGCCGc-- -3'
miRNA:   3'- aaUGCGCC-ACCGuUGCCGGCGGCaag -5'
29071 5' -58.8 NC_006146.1 + 119923 0.65 0.821758
Target:  5'- --uUGCGGUcaguguuGGCAGCGGCgcugcUGCCGgaggUCu -3'
miRNA:   3'- aauGCGCCA-------CCGUUGCCG-----GCGGCa---AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.