miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29072 3' -60.6 NC_006146.1 + 88336 0.66 0.776832
Target:  5'- uAUGGaGGCCGuUggGCCcaGGGGGUUaaAGGa -3'
miRNA:   3'- -UGCC-CCGGC-GuuCGG--CUCCCAAg-UCC- -5'
29072 3' -60.6 NC_006146.1 + 168643 0.66 0.776832
Target:  5'- cCGGGGCCcgaGCGcgcgucgguggGGCCuGAGGGggCGcGGc -3'
miRNA:   3'- uGCCCCGG---CGU-----------UCGG-CUCCCaaGU-CC- -5'
29072 3' -60.6 NC_006146.1 + 128202 0.66 0.774149
Target:  5'- -gGGGcGCCGCGGcGCCGGGccagacgcucuuucGGcgCGGGg -3'
miRNA:   3'- ugCCC-CGGCGUU-CGGCUC--------------CCaaGUCC- -5'
29072 3' -60.6 NC_006146.1 + 92353 0.66 0.773252
Target:  5'- uAUGGGGCgGCucgcauuggcauuGGCCGuacuGGGGUUCGc- -3'
miRNA:   3'- -UGCCCCGgCGu------------UCGGC----UCCCAAGUcc -5'
29072 3' -60.6 NC_006146.1 + 83869 0.66 0.767847
Target:  5'- aACGGGGCgugaUGCAAGC--GGGGUUUcgauggaagAGGg -3'
miRNA:   3'- -UGCCCCG----GCGUUCGgcUCCCAAG---------UCC- -5'
29072 3' -60.6 NC_006146.1 + 170406 0.66 0.767847
Target:  5'- -gGGGGCCucGgGGGCgGAGGGg--GGGg -3'
miRNA:   3'- ugCCCCGG--CgUUCGgCUCCCaagUCC- -5'
29072 3' -60.6 NC_006146.1 + 167611 0.66 0.767847
Target:  5'- -gGGGGCCucGgGGGCgGAGGGg--GGGg -3'
miRNA:   3'- ugCCCCGG--CgUUCGgCUCCCaagUCC- -5'
29072 3' -60.6 NC_006146.1 + 168543 0.66 0.767847
Target:  5'- -gGGGGCCucGgGGGCgGAGGGg--GGGg -3'
miRNA:   3'- ugCCCCGG--CgUUCGgCUCCCaagUCC- -5'
29072 3' -60.6 NC_006146.1 + 169475 0.66 0.767847
Target:  5'- -gGGGGCCucGgGGGCgGAGGGg--GGGg -3'
miRNA:   3'- ugCCCCGG--CgUUCGgCUCCCaagUCC- -5'
29072 3' -60.6 NC_006146.1 + 153383 0.66 0.767847
Target:  5'- gAUGGuGGCCGgAuuGuuGAGGGUgccaAGGg -3'
miRNA:   3'- -UGCC-CCGGCgUu-CggCUCCCAag--UCC- -5'
29072 3' -60.6 NC_006146.1 + 79112 0.66 0.766943
Target:  5'- gAUGGGGCUGagcugcaggaaauCAAGCCauGGGU-CGGGg -3'
miRNA:   3'- -UGCCCCGGC-------------GUUCGGcuCCCAaGUCC- -5'
29072 3' -60.6 NC_006146.1 + 98333 0.66 0.758752
Target:  5'- cACGGGGCCGgGcgcGGcCCGucccGGUcCAGGa -3'
miRNA:   3'- -UGCCCCGGCgU---UC-GGCuc--CCAaGUCC- -5'
29072 3' -60.6 NC_006146.1 + 71212 0.66 0.758752
Target:  5'- aGCGGGGCCGUAGcguGCUagaauugguGGGaGGUggAGGg -3'
miRNA:   3'- -UGCCCCGGCGUU---CGG---------CUC-CCAagUCC- -5'
29072 3' -60.6 NC_006146.1 + 77921 0.66 0.758752
Target:  5'- gGCGGgcGGCCucGCAGguGCCGGGGGUcgcuguuuggUCuGGg -3'
miRNA:   3'- -UGCC--CCGG--CGUU--CGGCUCCCA----------AGuCC- -5'
29072 3' -60.6 NC_006146.1 + 78572 0.66 0.758752
Target:  5'- uGCGGGuGCUGUucuGAGCCaGGGGagaGGGg -3'
miRNA:   3'- -UGCCC-CGGCG---UUCGGcUCCCaagUCC- -5'
29072 3' -60.6 NC_006146.1 + 129243 0.66 0.758752
Target:  5'- gAC-GGGCC-CAggugaGGCgCGAGGGU-CAGGg -3'
miRNA:   3'- -UGcCCCGGcGU-----UCG-GCUCCCAaGUCC- -5'
29072 3' -60.6 NC_006146.1 + 39833 0.66 0.75692
Target:  5'- gGCGGccucGGCCGCAcagugGGCCGGcGGGggcugugugccCGGGg -3'
miRNA:   3'- -UGCC----CCGGCGU-----UCGGCU-CCCaa---------GUCC- -5'
29072 3' -60.6 NC_006146.1 + 92827 0.66 0.749554
Target:  5'- -gGGGGCUGC-GGUaccaGGGGGUaaGGGg -3'
miRNA:   3'- ugCCCCGGCGuUCGg---CUCCCAagUCC- -5'
29072 3' -60.6 NC_006146.1 + 62381 0.66 0.749554
Target:  5'- gACGGGGCCuc-GGCCuGGGGUa-AGGu -3'
miRNA:   3'- -UGCCCCGGcguUCGGcUCCCAagUCC- -5'
29072 3' -60.6 NC_006146.1 + 396 0.66 0.749554
Target:  5'- cCGcccGCCGCGcGCUGGGGGUcCGGGg -3'
miRNA:   3'- uGCcc-CGGCGUuCGGCUCCCAaGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.