miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29072 5' -54.5 NC_006146.1 + 51820 0.66 0.960754
Target:  5'- gCGgCCUCCUCGGGAagcgccggaggUGggcuGCGgUUGCa -3'
miRNA:   3'- -GCgGGGGGAGUCCU-----------AUau--CGUgAACG- -5'
29072 5' -54.5 NC_006146.1 + 71447 0.66 0.960754
Target:  5'- uGCCCCCggCUCugGGGAUGUGGaACUguuuccagggccUGCc -3'
miRNA:   3'- gCGGGGG--GAG--UCCUAUAUCgUGA------------ACG- -5'
29072 5' -54.5 NC_006146.1 + 127767 0.66 0.960754
Target:  5'- uCGCCgaCCUCAGGGccaaGGCACcugGCg -3'
miRNA:   3'- -GCGGggGGAGUCCUaua-UCGUGaa-CG- -5'
29072 5' -54.5 NC_006146.1 + 33142 0.66 0.960754
Target:  5'- uGCCCCgCUCcggguGGGggGUGGCccgGCUggGCa -3'
miRNA:   3'- gCGGGGgGAG-----UCCuaUAUCG---UGAa-CG- -5'
29072 5' -54.5 NC_006146.1 + 33266 0.66 0.960754
Target:  5'- uGCCCCgCUCcggguGGGggGUGGCccgGCUggGCa -3'
miRNA:   3'- gCGGGGgGAG-----UCCuaUAUCG---UGAa-CG- -5'
29072 5' -54.5 NC_006146.1 + 54172 0.66 0.960754
Target:  5'- uCGUCCUCCUCuuucgccaggGGGAUcu-GCACcUGCc -3'
miRNA:   3'- -GCGGGGGGAG----------UCCUAuauCGUGaACG- -5'
29072 5' -54.5 NC_006146.1 + 379 0.66 0.958207
Target:  5'- cCGCgCCCCCUCAGGccccgcccgccgcGCGCUggggGUc -3'
miRNA:   3'- -GCG-GGGGGAGUCCuauau--------CGUGAa---CG- -5'
29072 5' -54.5 NC_006146.1 + 160116 0.66 0.957082
Target:  5'- gCGaCCUCCCUCAGGGgguagGUGGC-Ca--- -3'
miRNA:   3'- -GC-GGGGGGAGUCCUa----UAUCGuGaacg -5'
29072 5' -54.5 NC_006146.1 + 139157 0.66 0.957082
Target:  5'- cCGUCCCCC--GGGGg--GGCGCcUGUg -3'
miRNA:   3'- -GCGGGGGGagUCCUauaUCGUGaACG- -5'
29072 5' -54.5 NC_006146.1 + 132110 0.66 0.957082
Target:  5'- uGCaCCCCgCAGGAcuuccacaAGCACUUGUu -3'
miRNA:   3'- gCGgGGGGaGUCCUaua-----UCGUGAACG- -5'
29072 5' -54.5 NC_006146.1 + 73062 0.66 0.957082
Target:  5'- gGCCCCCUccucCAGGucGUGGUACUUc- -3'
miRNA:   3'- gCGGGGGGa---GUCCuaUAUCGUGAAcg -5'
29072 5' -54.5 NC_006146.1 + 155495 0.66 0.957082
Target:  5'- aGCCCCUCUgAGGccaccUGGCGuagguacugcucCUUGCg -3'
miRNA:   3'- gCGGGGGGAgUCCuau--AUCGU------------GAACG- -5'
29072 5' -54.5 NC_006146.1 + 43186 0.66 0.956702
Target:  5'- aGCCCCaucagcuCCUCgcgggaggcgGGGAUGgGGCGCU-GCu -3'
miRNA:   3'- gCGGGG-------GGAG----------UCCUAUaUCGUGAaCG- -5'
29072 5' -54.5 NC_006146.1 + 108400 0.66 0.953182
Target:  5'- aGCCCCCCagggcCAGGugcugcUGGCACgagaacaugGCg -3'
miRNA:   3'- gCGGGGGGa----GUCCuau---AUCGUGaa-------CG- -5'
29072 5' -54.5 NC_006146.1 + 126053 0.66 0.944685
Target:  5'- gGCUCCCUUgggUAGGGUAaacgGGCACgagggGCg -3'
miRNA:   3'- gCGGGGGGA---GUCCUAUa---UCGUGaa---CG- -5'
29072 5' -54.5 NC_006146.1 + 3821 0.66 0.944235
Target:  5'- aCGCCCCCCUCAcuuuuuuGGAgccGGCGg--GUa -3'
miRNA:   3'- -GCGGGGGGAGU-------CCUauaUCGUgaaCG- -5'
29072 5' -54.5 NC_006146.1 + 20193 0.66 0.94008
Target:  5'- gGCCCCCgggggcgCAGGAggcugGGCAUguacUGCg -3'
miRNA:   3'- gCGGGGGga-----GUCCUaua--UCGUGa---ACG- -5'
29072 5' -54.5 NC_006146.1 + 112442 0.66 0.94008
Target:  5'- uGCgCCCCCUCcGGccGUGGUggucacuggGCUUGUg -3'
miRNA:   3'- gCG-GGGGGAGuCCuaUAUCG---------UGAACG- -5'
29072 5' -54.5 NC_006146.1 + 52284 0.66 0.94008
Target:  5'- gCGCCCCCaCguacuggAGGAUGUcauGCGCguaggUGCu -3'
miRNA:   3'- -GCGGGGG-Gag-----UCCUAUAu--CGUGa----ACG- -5'
29072 5' -54.5 NC_006146.1 + 103419 0.67 0.935236
Target:  5'- uGCUCCCCUCGcuccuggaccGGGgcuucgcggAGCACaUGCg -3'
miRNA:   3'- gCGGGGGGAGU----------CCUaua------UCGUGaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.