Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29073 | 3' | -53.2 | NC_006146.1 | + | 104351 | 1.09 | 0.005457 |
Target: 5'- cCUUGGCGGACUUUAGCCUCACGUCCAg -3' miRNA: 3'- -GAACCGCCUGAAAUCGGAGUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 151273 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 157429 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 154351 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 145117 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 148195 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 142039 | 0.76 | 0.556482 |
Target: 5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3' miRNA: 3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 48330 | 0.72 | 0.760832 |
Target: 5'- -cUGGCGGuggugGGCCagGCGUCCAg -3' miRNA: 3'- gaACCGCCugaaaUCGGagUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 56812 | 0.71 | 0.798459 |
Target: 5'- -cUGGCGGGCgg-GGCUUCugGcCCc -3' miRNA: 3'- gaACCGCCUGaaaUCGGAGugCaGGu -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 152028 | 0.71 | 0.825084 |
Target: 5'- -gUGG-GGGCUgaGGCCcccgCACGUCCAc -3' miRNA: 3'- gaACCgCCUGAaaUCGGa---GUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 160137 | 0.71 | 0.825084 |
Target: 5'- --cGGCGGACUUUGGCaggCugG-CCu -3' miRNA: 3'- gaaCCGCCUGAAAUCGga-GugCaGGu -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 111286 | 0.7 | 0.857235 |
Target: 5'- cCUUGGUGGACgcgUUGGCgUaaaauggguagaaUGCGUCCGa -3' miRNA: 3'- -GAACCGCCUGa--AAUCGgA-------------GUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 110162 | 0.7 | 0.864216 |
Target: 5'- uCUUGGCGGAUcucuguccagGGCCUCAgCG-CCGg -3' miRNA: 3'- -GAACCGCCUGaaa-------UCGGAGU-GCaGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 42375 | 0.69 | 0.887593 |
Target: 5'- -gUGGCGGuCgugAGCCgcaACGUCCu -3' miRNA: 3'- gaACCGCCuGaaaUCGGag-UGCAGGu -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 168471 | 0.69 | 0.887593 |
Target: 5'- -gUGcGCaGAUcc-GGCCUCACGUCCAc -3' miRNA: 3'- gaAC-CGcCUGaaaUCGGAGUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 55510 | 0.69 | 0.913459 |
Target: 5'- --cGGCGGACg-UGGCCuauuuUCAaaaGUCCAa -3' miRNA: 3'- gaaCCGCCUGaaAUCGG-----AGUg--CAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 42001 | 0.69 | 0.913459 |
Target: 5'- --gGGCGGACgagcacgaAGCC-CGCGUUCGg -3' miRNA: 3'- gaaCCGCCUGaaa-----UCGGaGUGCAGGU- -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 15554 | 0.68 | 0.924936 |
Target: 5'- --aGGCGGGCcUUcGUCUCGgGUCCc -3' miRNA: 3'- gaaCCGCCUGaAAuCGGAGUgCAGGu -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 120769 | 0.68 | 0.930304 |
Target: 5'- -cUGGCGGc-----GCCUCAUGUCCc -3' miRNA: 3'- gaACCGCCugaaauCGGAGUGCAGGu -5' |
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29073 | 3' | -53.2 | NC_006146.1 | + | 48202 | 0.68 | 0.944935 |
Target: 5'- aCUUGGCauccggGGACUggagGGCCUgGCGcgCCu -3' miRNA: 3'- -GAACCG------CCUGAaa--UCGGAgUGCa-GGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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