miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29073 3' -53.2 NC_006146.1 + 48202 0.68 0.944935
Target:  5'- aCUUGGCauccggGGACUggagGGCCUgGCGcgCCu -3'
miRNA:   3'- -GAACCG------CCUGAaa--UCGGAgUGCa-GGu -5'
29073 3' -53.2 NC_006146.1 + 120769 0.68 0.930304
Target:  5'- -cUGGCGGc-----GCCUCAUGUCCc -3'
miRNA:   3'- gaACCGCCugaaauCGGAGUGCAGGu -5'
29073 3' -53.2 NC_006146.1 + 15554 0.68 0.924936
Target:  5'- --aGGCGGGCcUUcGUCUCGgGUCCc -3'
miRNA:   3'- gaaCCGCCUGaAAuCGGAGUgCAGGu -5'
29073 3' -53.2 NC_006146.1 + 42001 0.69 0.913459
Target:  5'- --gGGCGGACgagcacgaAGCC-CGCGUUCGg -3'
miRNA:   3'- gaaCCGCCUGaaa-----UCGGaGUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 55510 0.69 0.913459
Target:  5'- --cGGCGGACg-UGGCCuauuuUCAaaaGUCCAa -3'
miRNA:   3'- gaaCCGCCUGaaAUCGG-----AGUg--CAGGU- -5'
29073 3' -53.2 NC_006146.1 + 168471 0.69 0.887593
Target:  5'- -gUGcGCaGAUcc-GGCCUCACGUCCAc -3'
miRNA:   3'- gaAC-CGcCUGaaaUCGGAGUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 42375 0.69 0.887593
Target:  5'- -gUGGCGGuCgugAGCCgcaACGUCCu -3'
miRNA:   3'- gaACCGCCuGaaaUCGGag-UGCAGGu -5'
29073 3' -53.2 NC_006146.1 + 110162 0.7 0.864216
Target:  5'- uCUUGGCGGAUcucuguccagGGCCUCAgCG-CCGg -3'
miRNA:   3'- -GAACCGCCUGaaa-------UCGGAGU-GCaGGU- -5'
29073 3' -53.2 NC_006146.1 + 111286 0.7 0.857235
Target:  5'- cCUUGGUGGACgcgUUGGCgUaaaauggguagaaUGCGUCCGa -3'
miRNA:   3'- -GAACCGCCUGa--AAUCGgA-------------GUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 160137 0.71 0.825084
Target:  5'- --cGGCGGACUUUGGCaggCugG-CCu -3'
miRNA:   3'- gaaCCGCCUGAAAUCGga-GugCaGGu -5'
29073 3' -53.2 NC_006146.1 + 152028 0.71 0.825084
Target:  5'- -gUGG-GGGCUgaGGCCcccgCACGUCCAc -3'
miRNA:   3'- gaACCgCCUGAaaUCGGa---GUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 56812 0.71 0.798459
Target:  5'- -cUGGCGGGCgg-GGCUUCugGcCCc -3'
miRNA:   3'- gaACCGCCUGaaaUCGGAGugCaGGu -5'
29073 3' -53.2 NC_006146.1 + 48330 0.72 0.760832
Target:  5'- -cUGGCGGuggugGGCCagGCGUCCAg -3'
miRNA:   3'- gaACCGCCugaaaUCGGagUGCAGGU- -5'
29073 3' -53.2 NC_006146.1 + 142039 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 145117 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 148195 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 151273 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 157429 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 154351 0.76 0.556482
Target:  5'- --gGGUgaGGACUUUGGCCUCugGggCCAc -3'
miRNA:   3'- gaaCCG--CCUGAAAUCGGAGugCa-GGU- -5'
29073 3' -53.2 NC_006146.1 + 104351 1.09 0.005457
Target:  5'- cCUUGGCGGACUUUAGCCUCACGUCCAg -3'
miRNA:   3'- -GAACCGCCUGAAAUCGGAGUGCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.