miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29074 3' -51.6 NC_006146.1 + 155542 0.67 0.978098
Target:  5'- cGCGUCCG---AGAGGGCGUuggagccgggcuCGCGCGg -3'
miRNA:   3'- -UGUAGGCguaUCUCCCGUAu-----------GUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 18382 0.69 0.939176
Target:  5'- cACAUCaug--GGAGGGCuaGUACACACGc -3'
miRNA:   3'- -UGUAGgcguaUCUCCCG--UAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 21460 0.69 0.939176
Target:  5'- cACAUCaug--GGAGGGCuaGUACACACGc -3'
miRNA:   3'- -UGUAGgcguaUCUCCCG--UAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 24538 0.69 0.939176
Target:  5'- cACAUCaug--GGAGGGCuaGUACACACGc -3'
miRNA:   3'- -UGUAGgcguaUCUCCCG--UAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 27616 0.69 0.939176
Target:  5'- cACAUCaug--GGAGGGCuaGUACACACGc -3'
miRNA:   3'- -UGUAGgcguaUCUCCCG--UAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 159219 0.69 0.939176
Target:  5'- aAUAUCUGCGUggauaccguGGGGGGCcagGCugGCAu -3'
miRNA:   3'- -UGUAGGCGUA---------UCUCCCGua-UGugUGU- -5'
29074 3' -51.6 NC_006146.1 + 100168 0.69 0.943954
Target:  5'- gGCGUCCGCGaGGGGGGCAa------- -3'
miRNA:   3'- -UGUAGGCGUaUCUCCCGUaugugugu -5'
29074 3' -51.6 NC_006146.1 + 100235 0.68 0.952755
Target:  5'- aGC-UCCGUGgcaguGGGGGCGUucACGCACGg -3'
miRNA:   3'- -UGuAGGCGUau---CUCCCGUA--UGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 117430 0.68 0.960576
Target:  5'- aAUAUCCGUGacGGGGGC-UGCAUACu -3'
miRNA:   3'- -UGUAGGCGUauCUCCCGuAUGUGUGu -5'
29074 3' -51.6 NC_006146.1 + 15304 0.69 0.939176
Target:  5'- cACAUCaug--GGAGGGCuaGUACACACGc -3'
miRNA:   3'- -UGUAGgcguaUCUCCCG--UAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 48206 0.75 0.682287
Target:  5'- gGCAUCCGgGgacUGGAGGGCcugGCGCGCc -3'
miRNA:   3'- -UGUAGGCgU---AUCUCCCGua-UGUGUGu -5'
29074 3' -51.6 NC_006146.1 + 8248 0.77 0.566253
Target:  5'- aGCAUCUGCcuacgAGGGGGCAUGCACc-- -3'
miRNA:   3'- -UGUAGGCGua---UCUCCCGUAUGUGugu -5'
29074 3' -51.6 NC_006146.1 + 124184 0.67 0.982941
Target:  5'- -gAUUCGCAaGGGGGGCGcugaGCAgGCAg -3'
miRNA:   3'- ugUAGGCGUaUCUCCCGUa---UGUgUGU- -5'
29074 3' -51.6 NC_006146.1 + 94902 0.66 0.984854
Target:  5'- gGCGUCUGUcUGGGuGGGCGagccCACGCAg -3'
miRNA:   3'- -UGUAGGCGuAUCU-CCCGUau--GUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 127141 0.68 0.967453
Target:  5'- uGC-UCCGCGUGGAGcuggacGGCGUcAUGCGCGa -3'
miRNA:   3'- -UGuAGGCGUAUCUC------CCGUA-UGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 99200 0.66 0.989623
Target:  5'- gGCGUCCGCcuccagGGAGGccGCGgccucgGCGCGCc -3'
miRNA:   3'- -UGUAGGCGua----UCUCC--CGUa-----UGUGUGu -5'
29074 3' -51.6 NC_006146.1 + 105730 1.08 0.008063
Target:  5'- cACAUCCGCAUAGAGGGCAUACACACAc -3'
miRNA:   3'- -UGUAGGCGUAUCUCCCGUAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 22904 0.69 0.950219
Target:  5'- aACAUgUGCAgggaaggccccacGAGGGcCAUGCACACGa -3'
miRNA:   3'- -UGUAgGCGUau-----------CUCCC-GUAUGUGUGU- -5'
29074 3' -51.6 NC_006146.1 + 46432 0.69 0.943954
Target:  5'- uGCAUCUGgaCAUAGAGGG---GCACACu -3'
miRNA:   3'- -UGUAGGC--GUAUCUCCCguaUGUGUGu -5'
29074 3' -51.6 NC_006146.1 + 165220 0.67 0.982941
Target:  5'- aGCAccCCGUGUAGGGGGCAaAgGCGgAg -3'
miRNA:   3'- -UGUa-GGCGUAUCUCCCGUaUgUGUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.