miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 3' -62.6 NC_006146.1 + 45976 0.66 0.64019
Target:  5'- cCGGgGCaGCUCCUCGCcccgcGUGuaGGCCCg -3'
miRNA:   3'- -GUCaCGgCGAGGAGCGu----CAC--CCGGGa -5'
29075 3' -62.6 NC_006146.1 + 48843 0.66 0.610731
Target:  5'- ---aGCUGCUCCUCGgAGgcGGGCgCg -3'
miRNA:   3'- gucaCGGCGAGGAGCgUCa-CCCGgGa -5'
29075 3' -62.6 NC_006146.1 + 42668 0.66 0.610731
Target:  5'- --cUGCgGCUCgCcCGCGGUGGGCugCCUg -3'
miRNA:   3'- gucACGgCGAG-GaGCGUCACCCG--GGA- -5'
29075 3' -62.6 NC_006146.1 + 102784 0.66 0.600932
Target:  5'- uGGcGCCGCUCC-CGCGGaccggcUGGccGCCCa -3'
miRNA:   3'- gUCaCGGCGAGGaGCGUC------ACC--CGGGa -5'
29075 3' -62.6 NC_006146.1 + 127640 0.67 0.552377
Target:  5'- cCAG-GCCGCccugugCCUCuCGGUGGGCUa- -3'
miRNA:   3'- -GUCaCGGCGa-----GGAGcGUCACCCGGga -5'
29075 3' -62.6 NC_006146.1 + 159261 0.67 0.533268
Target:  5'- uCGGUGCaaCGCcgCCaCGCGGgccucgGGGCCCUc -3'
miRNA:   3'- -GUCACG--GCGa-GGaGCGUCa-----CCCGGGA- -5'
29075 3' -62.6 NC_006146.1 + 78385 0.67 0.533268
Target:  5'- aGGUGUC-CUCCUCGUccucugauaggAGccgcUGGGCCCUu -3'
miRNA:   3'- gUCACGGcGAGGAGCG-----------UC----ACCCGGGA- -5'
29075 3' -62.6 NC_006146.1 + 22601 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 19523 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 16445 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 28757 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 13367 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 25679 0.68 0.523802
Target:  5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3'
miRNA:   3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 57160 0.69 0.468516
Target:  5'- ---cGCCGCuuccacgccuUCCUCacccCAGUGGGCCCc -3'
miRNA:   3'- gucaCGGCG----------AGGAGc---GUCACCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 54415 0.69 0.433368
Target:  5'- ---cGCCGCUCCUcCGCGGUggagaGGGUCUc -3'
miRNA:   3'- gucaCGGCGAGGA-GCGUCA-----CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 10851 0.71 0.360258
Target:  5'- -uGUGCCGCUCCUCuGCGgcaucaccGUGGaGCCg- -3'
miRNA:   3'- guCACGGCGAGGAG-CGU--------CACC-CGGga -5'
29075 3' -62.6 NC_006146.1 + 50534 0.71 0.352683
Target:  5'- uCAGgaGCCGCUCCagGUcccgGGUGGGCaCCUg -3'
miRNA:   3'- -GUCa-CGGCGAGGagCG----UCACCCG-GGA- -5'
29075 3' -62.6 NC_006146.1 + 83509 0.71 0.352683
Target:  5'- uGGUGCCuCUCCUggCGCAGgguucugaucaGGGCCCa -3'
miRNA:   3'- gUCACGGcGAGGA--GCGUCa----------CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 148133 0.71 0.345222
Target:  5'- gAGUGCCGCaugggCUUCGUgcuGGUcaGGGCCCg -3'
miRNA:   3'- gUCACGGCGa----GGAGCG---UCA--CCCGGGa -5'
29075 3' -62.6 NC_006146.1 + 100034 0.72 0.312374
Target:  5'- gGGUccGCgGCUUCUCGCGGUcguguucccucacucGGGCCCg -3'
miRNA:   3'- gUCA--CGgCGAGGAGCGUCA---------------CCCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.