miRNA: 3'- -GUCaCGGCGa-----GGAGcGUCACCCGGga -5'
miRNA: 3'- gUCaCGGCGAGGaGCGUC------ACC--CGGGa -5'
miRNA: 3'- gucACGgCGAG-GaGCGUCACCCG--GGA- -5'
miRNA: 3'- gucaCGGCGAGGAGCgUCa-CCCGgGa -5'
miRNA: 3'- -GUCaCGgCGAGGAGCGu----CAC--CCGGGa -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29075 | 3' | -62.6 | NC_006146.1 | + | 127640 | 0.67 | 0.552377 |
|
Target: 5'- cCAG-GCCGCccugugCCUCuCGGUGGGCUa- -3' miRNA: 3'- -GUCaCGGCGa-----GGAGcGUCACCCGGga -5' |
|||||||
| 29075 | 3' | -62.6 | NC_006146.1 | + | 102784 | 0.66 | 0.600932 |
|
Target: 5'- uGGcGCCGCUCC-CGCGGaccggcUGGccGCCCa -3' miRNA: 3'- gUCaCGGCGAGGaGCGUC------ACC--CGGGa -5' |
|||||||
| 29075 | 3' | -62.6 | NC_006146.1 | + | 42668 | 0.66 | 0.610731 |
|
Target: 5'- --cUGCgGCUCgCcCGCGGUGGGCugCCUg -3' miRNA: 3'- gucACGgCGAG-GaGCGUCACCCG--GGA- -5' |
|||||||
| 29075 | 3' | -62.6 | NC_006146.1 | + | 48843 | 0.66 | 0.610731 |
|
Target: 5'- ---aGCUGCUCCUCGgAGgcGGGCgCg -3' miRNA: 3'- gucaCGGCGAGGAGCgUCa-CCCGgGa -5' |
|||||||
| 29075 | 3' | -62.6 | NC_006146.1 | + | 45976 | 0.66 | 0.64019 |
|
Target: 5'- cCGGgGCaGCUCCUCGCcccgcGUGuaGGCCCg -3' miRNA: 3'- -GUCaCGgCGAGGAGCGu----CAC--CCGGGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home