Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29075 | 3' | -62.6 | NC_006146.1 | + | 127640 | 0.67 | 0.552377 |
Target: 5'- cCAG-GCCGCccugugCCUCuCGGUGGGCUa- -3' miRNA: 3'- -GUCaCGGCGa-----GGAGcGUCACCCGGga -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 54415 | 0.69 | 0.433368 |
Target: 5'- ---cGCCGCUCCUcCGCGGUggagaGGGUCUc -3' miRNA: 3'- gucaCGGCGAGGA-GCGUCA-----CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 57160 | 0.69 | 0.468516 |
Target: 5'- ---cGCCGCuuccacgccuUCCUCacccCAGUGGGCCCc -3' miRNA: 3'- gucaCGGCG----------AGGAGc---GUCACCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 13367 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 16445 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 19523 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 22601 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 25679 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 28757 | 0.68 | 0.523802 |
Target: 5'- gGGaGCCGC-CCUCGgGGcccaGGGCCCc -3' miRNA: 3'- gUCaCGGCGaGGAGCgUCa---CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 50534 | 0.71 | 0.352683 |
Target: 5'- uCAGgaGCCGCUCCagGUcccgGGUGGGCaCCUg -3' miRNA: 3'- -GUCa-CGGCGAGGagCG----UCACCCG-GGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 148133 | 0.71 | 0.345222 |
Target: 5'- gAGUGCCGCaugggCUUCGUgcuGGUcaGGGCCCg -3' miRNA: 3'- gUCACGGCGa----GGAGCG---UCA--CCCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 164426 | 0.73 | 0.258631 |
Target: 5'- cCGGUcCUGUUUCUUGCAGUGGGCCg- -3' miRNA: 3'- -GUCAcGGCGAGGAGCGUCACCCGGga -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 42668 | 0.66 | 0.610731 |
Target: 5'- --cUGCgGCUCgCcCGCGGUGGGCugCCUg -3' miRNA: 3'- gucACGgCGAG-GaGCGUCACCCG--GGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 48843 | 0.66 | 0.610731 |
Target: 5'- ---aGCUGCUCCUCGgAGgcGGGCgCg -3' miRNA: 3'- gucaCGGCGAGGAGCgUCa-CCCGgGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 45976 | 0.66 | 0.64019 |
Target: 5'- cCGGgGCaGCUCCUCGCcccgcGUGuaGGCCCg -3' miRNA: 3'- -GUCaCGgCGAGGAGCGu----CAC--CCGGGa -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 105858 | 1.07 | 0.00104 |
Target: 5'- gCAGUGCCGCUCCUCGCAGUGGGCCCUg -3' miRNA: 3'- -GUCACGGCGAGGAGCGUCACCCGGGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 155849 | 0.78 | 0.116597 |
Target: 5'- cCAGUGCC--UCCUCGCAGgcccggcGGGCCCUg -3' miRNA: 3'- -GUCACGGcgAGGAGCGUCa------CCCGGGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 149271 | 0.77 | 0.138823 |
Target: 5'- -cGUGCCGCUCCgCGUAGgccGGGUCCUc -3' miRNA: 3'- guCACGGCGAGGaGCGUCa--CCCGGGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 159261 | 0.67 | 0.533268 |
Target: 5'- uCGGUGCaaCGCcgCCaCGCGGgccucgGGGCCCUc -3' miRNA: 3'- -GUCACG--GCGa-GGaGCGUCa-----CCCGGGA- -5' |
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29075 | 3' | -62.6 | NC_006146.1 | + | 42640 | 0.73 | 0.247003 |
Target: 5'- ---cGCCGUgggCCUcaCGUAGUGGGCCCa -3' miRNA: 3'- gucaCGGCGa--GGA--GCGUCACCCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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