miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 47747 0.66 0.934955
Target:  5'- gAGGGgcugGCCCugggGAC--GGAGAGCGGc -3'
miRNA:   3'- -UCUCa---CGGGua--UUGguCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 39894 0.66 0.934955
Target:  5'- uGAGcgGCCUgcggggcgggaaAcGACgAGGAGGGUGGGg -3'
miRNA:   3'- uCUCa-CGGG------------UaUUGgUCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 39660 0.66 0.934955
Target:  5'- gAGAcUGCCU-UGGCCuuGGAGgcGGCGGGc -3'
miRNA:   3'- -UCUcACGGGuAUUGGu-CCUC--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 75821 0.66 0.929922
Target:  5'- cGAG-GCCCugcgggacAUGcACCAGGGGAGCucuGGa -3'
miRNA:   3'- uCUCaCGGG--------UAU-UGGUCCUCUCGc--CC- -5'
29075 5' -55.8 NC_006146.1 + 108365 0.66 0.929922
Target:  5'- gGGAGUGCU---GGCCAGGAGAcCGa- -3'
miRNA:   3'- -UCUCACGGguaUUGGUCCUCUcGCcc -5'
29075 5' -55.8 NC_006146.1 + 23468 0.66 0.929922
Target:  5'- cGAG-GCCCuggccGUGGCCAGGuacGGGCuGGu -3'
miRNA:   3'- uCUCaCGGG-----UAUUGGUCCu--CUCGcCC- -5'
29075 5' -55.8 NC_006146.1 + 141818 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 144896 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 147974 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 151052 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 154130 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 157208 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 94817 0.66 0.929921
Target:  5'- gGGGGuUGCCC---ACCAGGAaGGUGaGGa -3'
miRNA:   3'- -UCUC-ACGGGuauUGGUCCUcUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 93280 0.66 0.929921
Target:  5'- cGGGGuUGCCCuc-GCCGGuggucaucucuGAGAGgGGGu -3'
miRNA:   3'- -UCUC-ACGGGuauUGGUC-----------CUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 93733 0.66 0.929405
Target:  5'- -aGGUGCCuCGUAcaaaaucccauggGCCAGGuucucuGCGGGg -3'
miRNA:   3'- ucUCACGG-GUAU-------------UGGUCCucu---CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 144690 0.66 0.926788
Target:  5'- cGGGcGCCCuu-GCCuGGAGGcgagacugggcggcuGCGGGg -3'
miRNA:   3'- uCUCaCGGGuauUGGuCCUCU---------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 42313 0.66 0.92519
Target:  5'- cGGAGUGCCCugcgagguugcugacUGGcCCGGGAggucagugucuGAGcCGGGa -3'
miRNA:   3'- -UCUCACGGGu--------------AUU-GGUCCU-----------CUC-GCCC- -5'
29075 5' -55.8 NC_006146.1 + 122959 0.66 0.924652
Target:  5'- ----aGCUCcUGACCaAGaGGGAGCGGGa -3'
miRNA:   3'- ucucaCGGGuAUUGG-UC-CUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 101912 0.66 0.924652
Target:  5'- uGGGGUuuagaaaugcGCCgGUGGCCGcGGGGGCGGu -3'
miRNA:   3'- -UCUCA----------CGGgUAUUGGUcCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 13902 0.66 0.924112
Target:  5'- cGAGgccGCgCGUGACUuuuuggaAGGAGuGGCGGGu -3'
miRNA:   3'- uCUCa--CGgGUAUUGG-------UCCUC-UCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.