miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 99385 0.67 0.901223
Target:  5'- uGAG-GCCCAggagcgagucGGCCAGGGGGGUGccGGc -3'
miRNA:   3'- uCUCaCGGGUa---------UUGGUCCUCUCGC--CC- -5'
29075 5' -55.8 NC_006146.1 + 47995 0.67 0.881235
Target:  5'- cAGAGgugGCUgGUGG-CGGGAGgcuuGGCGGGg -3'
miRNA:   3'- -UCUCa--CGGgUAUUgGUCCUC----UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 153401 0.67 0.901223
Target:  5'- gAGGGUGCCaagggaGUucCCGGG--GGCGGGu -3'
miRNA:   3'- -UCUCACGGg-----UAuuGGUCCucUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167488 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 146722 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 169352 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 168420 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 169295 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167431 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 38809 0.67 0.881235
Target:  5'- cGGGGUGCaCAUcugcAGCCAGGcccuGAGCcuGGGg -3'
miRNA:   3'- -UCUCACGgGUA----UUGGUCCu---CUCG--CCC- -5'
29075 5' -55.8 NC_006146.1 + 170226 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 152878 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 155956 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 149800 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 155434 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 146200 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 143122 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 4949 0.67 0.884016
Target:  5'- --uGUGCCCcgggGACCAGGGGccacgagagccuccuGGCGGc -3'
miRNA:   3'- ucuCACGGGua--UUGGUCCUC---------------UCGCCc -5'
29075 5' -55.8 NC_006146.1 + 34064 0.67 0.880534
Target:  5'- gGGGGU-CCCGUGgcacgggGCCGGGGGuccCGGGg -3'
miRNA:   3'- -UCUCAcGGGUAU-------UGGUCCUCuc-GCCC- -5'
29075 5' -55.8 NC_006146.1 + 55760 0.67 0.894786
Target:  5'- ----cGCCCGgcggcgGGCCAGGGGcAGCGaGGc -3'
miRNA:   3'- ucucaCGGGUa-----UUGGUCCUC-UCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.