miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 105895 0.97 0.020816
Target:  5'- aAGAGUGCCCAUAACCAGGGaAGCGGGu -3'
miRNA:   3'- -UCUCACGGGUAUUGGUCCUcUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 114959 0.8 0.271033
Target:  5'- uGAGUGCCCuggaggAGgCAGaGAGGGCGGGg -3'
miRNA:   3'- uCUCACGGGua----UUgGUC-CUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 137746 0.78 0.332581
Target:  5'- -cGGUGCCCA--GCCGGGccaccccccacccGGAGCGGGg -3'
miRNA:   3'- ucUCACGGGUauUGGUCC-------------UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 137623 0.78 0.332581
Target:  5'- -cGGUGCCCA--GCCGGGccaccccccacccGGAGCGGGg -3'
miRNA:   3'- ucUCACGGGUauUGGUCC-------------UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 30127 0.78 0.348522
Target:  5'- cAGAGcGCCCccAugCAGGGGGGUGGGc -3'
miRNA:   3'- -UCUCaCGGGuaUugGUCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 120125 0.76 0.440579
Target:  5'- cGuGUGCCCAcaccACCgAGGAGAGCGaGGa -3'
miRNA:   3'- uCuCACGGGUau--UGG-UCCUCUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 145034 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 148112 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 141956 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157346 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 151190 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 154268 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 78574 0.74 0.535074
Target:  5'- cGGGUGCUguUcugAGCCAGGGGAGaGGGg -3'
miRNA:   3'- uCUCACGGguA---UUGGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 89783 0.74 0.543961
Target:  5'- cGAGggGCCCAUGGCCguggacgaggacgAGGcAGAgGCGGGg -3'
miRNA:   3'- uCUCa-CGGGUAUUGG-------------UCC-UCU-CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 53112 0.74 0.544951
Target:  5'- cGGAGgcgGCCCGgc-CCGGGGGAGCGcGa -3'
miRNA:   3'- -UCUCa--CGGGUauuGGUCCUCUCGC-Cc -5'
29075 5' -55.8 NC_006146.1 + 51795 0.74 0.554887
Target:  5'- cGAGUccaGCCacuUGAUCAGGAGGGCGGc -3'
miRNA:   3'- uCUCA---CGGgu-AUUGGUCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 53475 0.73 0.563874
Target:  5'- cGGGUGCCuCGUcggucagGGCCGGGGGuGCGGu -3'
miRNA:   3'- uCUCACGG-GUA-------UUGGUCCUCuCGCCc -5'
29075 5' -55.8 NC_006146.1 + 31680 0.73 0.574909
Target:  5'- ----aGCCCAggGACCAGGgaAGGGUGGGg -3'
miRNA:   3'- ucucaCGGGUa-UUGGUCC--UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 163455 0.73 0.605227
Target:  5'- cGGGGUGCCCGgucuugCAGGuucuGAGUGGGu -3'
miRNA:   3'- -UCUCACGGGUauug--GUCCu---CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 130714 0.72 0.62555
Target:  5'- gAGAGaGCCCGaggagGACgAGGAGgcGGCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa----UUGgUCCUC--UCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.