miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 3764 0.72 0.645892
Target:  5'- -cAGUGCCCAcuuucuACgCGGGGGGGgGGGg -3'
miRNA:   3'- ucUCACGGGUau----UG-GUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 18245 0.72 0.656051
Target:  5'- gGGGGaGCUCAUGgacaGCCuGGGGAGCGuGGg -3'
miRNA:   3'- -UCUCaCGGGUAU----UGGuCCUCUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 107062 0.72 0.656051
Target:  5'- cGAGUGgCUAgcaGCCAGGAGAGaaaaugaaggcCGGGg -3'
miRNA:   3'- uCUCACgGGUau-UGGUCCUCUC-----------GCCC- -5'
29075 5' -55.8 NC_006146.1 + 8412 0.71 0.675294
Target:  5'- gAGGGUcuucauaGUCCGgacccugggGACCAGGAGAGCucGGGg -3'
miRNA:   3'- -UCUCA-------CGGGUa--------UUGGUCCUCUCG--CCC- -5'
29075 5' -55.8 NC_006146.1 + 128429 0.71 0.68638
Target:  5'- gAGGGUGaUCCGggccgcaGACCgggcgggaGGGGGAGCGGGa -3'
miRNA:   3'- -UCUCAC-GGGUa------UUGG--------UCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 131512 0.71 0.706392
Target:  5'- cGGGaaaggGCCCAgggUAACCGGGcgccGAGUGGGa -3'
miRNA:   3'- uCUCa----CGGGU---AUUGGUCCu---CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 66167 0.71 0.706392
Target:  5'- cAGGGUGCUCAUGACCgAGGgccAGAcGCaGGa -3'
miRNA:   3'- -UCUCACGGGUAUUGG-UCC---UCU-CGcCC- -5'
29075 5' -55.8 NC_006146.1 + 158565 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 32123 0.7 0.726156
Target:  5'- aGGGGUGCCaCGUcaccCCGGGgugcuGGGGUGGGg -3'
miRNA:   3'- -UCUCACGG-GUAuu--GGUCC-----UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 143174 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 149330 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 146252 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 155486 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 152408 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 135953 0.7 0.726156
Target:  5'- aGGGGUGCCaCGUcaccCCGGGgugcuGGGGUGGGg -3'
miRNA:   3'- -UCUCACGG-GUAuu--GGUCC-----UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 169534 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 168602 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167669 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 170465 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 16954 0.7 0.735922
Target:  5'- --cGUGCCCAa---CGGGAGcGGCGGGc -3'
miRNA:   3'- ucuCACGGGUauugGUCCUC-UCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.