miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 54995 0.66 0.923026
Target:  5'- cGGGGUGgCCGgaaGCCccccgggcgggaugGGGGcGGGCGGGa -3'
miRNA:   3'- -UCUCACgGGUau-UGG--------------UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 131462 0.66 0.919147
Target:  5'- aGGAGcaggGCCCAgugcacCCAGGuGGGUcuGGGg -3'
miRNA:   3'- -UCUCa---CGGGUauu---GGUCCuCUCG--CCC- -5'
29075 5' -55.8 NC_006146.1 + 98224 0.66 0.919147
Target:  5'- cAGGG-GCauggCGUAGCCGGGgugcAGGGCGGa -3'
miRNA:   3'- -UCUCaCGg---GUAUUGGUCC----UCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 46892 0.66 0.919147
Target:  5'- uGGGUGUCCGacgagcguaGGCCGGGuuGAGgGGGu -3'
miRNA:   3'- uCUCACGGGUa--------UUGGUCCu-CUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 57305 0.66 0.915731
Target:  5'- aGGAG-GCCUuugugGACCuGGAcgcguggcucucuggGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGua---UUGGuCCU---------------CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 127951 0.66 0.913406
Target:  5'- cAGcGUGCCCGgGGC--GGAGGGCaGGGa -3'
miRNA:   3'- -UCuCACGGGUaUUGguCCUCUCG-CCC- -5'
29075 5' -55.8 NC_006146.1 + 48608 0.66 0.913406
Target:  5'- aAGGGUGuUCCAgucgucggguGCCGuGGGGGCGGGc -3'
miRNA:   3'- -UCUCAC-GGGUau--------UGGUcCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 99039 0.66 0.913406
Target:  5'- uAGAG-GCCCc---CCAGGGcccGGCGGGu -3'
miRNA:   3'- -UCUCaCGGGuauuGGUCCUc--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157531 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 148297 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 154453 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 151375 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 109369 0.66 0.913406
Target:  5'- aGGuGcGCCCGUAgGCCAGGuuucugaaugacAGGGCGGc -3'
miRNA:   3'- -UCuCaCGGGUAU-UGGUCC------------UCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 145219 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 142141 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 57007 0.66 0.913406
Target:  5'- aAGGG-GgCCAUGGCCgAGGAGgagguGGCGGu -3'
miRNA:   3'- -UCUCaCgGGUAUUGG-UCCUC-----UCGCCc -5'
29075 5' -55.8 NC_006146.1 + 40258 0.66 0.913406
Target:  5'- cGGGUGggaUCCGUAGuaGGGAGGcGCGGGc -3'
miRNA:   3'- uCUCAC---GGGUAUUggUCCUCU-CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 64375 0.66 0.913406
Target:  5'- -uGGUGCCC---ACCAGGGGAuGCGc- -3'
miRNA:   3'- ucUCACGGGuauUGGUCCUCU-CGCcc -5'
29075 5' -55.8 NC_006146.1 + 105172 0.66 0.913406
Target:  5'- aAGAGgccgcaccGUCCAgUGACCGGGgccggGGAGcCGGGg -3'
miRNA:   3'- -UCUCa-------CGGGU-AUUGGUCC-----UCUC-GCCC- -5'
29075 5' -55.8 NC_006146.1 + 152878 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.