miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 279 0.7 0.76465
Target:  5'- gGGGGaGCCCGggaaGACCcGGGG-GCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa---UUGGuCCUCuCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 1210 0.7 0.76465
Target:  5'- gGGGGaGCCCGggaaGACCcGGGG-GCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa---UUGGuCCUCuCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 2142 0.7 0.76465
Target:  5'- gGGGGaGCCCGggaaGACCcGGGG-GCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa---UUGGuCCUCuCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 3074 0.7 0.76465
Target:  5'- gGGGGaGCCCGggaaGACCcGGGG-GCGGGc -3'
miRNA:   3'- -UCUCaCGGGUa---UUGGuCCUCuCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 3764 0.72 0.645892
Target:  5'- -cAGUGCCCAcuuucuACgCGGGGGGGgGGGg -3'
miRNA:   3'- ucUCACGGGUau----UG-GUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 4949 0.67 0.884016
Target:  5'- --uGUGCCCcgggGACCAGGGGccacgagagccuccuGGCGGc -3'
miRNA:   3'- ucuCACGGGua--UUGGUCCUC---------------UCGCCc -5'
29075 5' -55.8 NC_006146.1 + 8412 0.71 0.675294
Target:  5'- gAGGGUcuucauaGUCCGgacccugggGACCAGGAGAGCucGGGg -3'
miRNA:   3'- -UCUCA-------CGGGUa--------UUGGUCCUCUCG--CCC- -5'
29075 5' -55.8 NC_006146.1 + 12018 0.68 0.827205
Target:  5'- -cGGUGCCCGaGACCGGcAGcuacguGGCGGGu -3'
miRNA:   3'- ucUCACGGGUaUUGGUCcUC------UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 12981 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 13902 0.66 0.924112
Target:  5'- cGAGgccGCgCGUGACUuuuuggaAGGAGuGGCGGGu -3'
miRNA:   3'- uCUCa--CGgGUAUUGG-------UCCUC-UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 14376 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 15708 0.68 0.835505
Target:  5'- cGGG-GCCacUGGCCgAGGAGAGgGGGc -3'
miRNA:   3'- uCUCaCGGguAUUGG-UCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 16059 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 16954 0.7 0.735922
Target:  5'- --cGUGCCCAa---CGGGAGcGGCGGGc -3'
miRNA:   3'- ucuCACGGGUauugGUCCUC-UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 17454 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 18245 0.72 0.656051
Target:  5'- gGGGGaGCUCAUGgacaGCCuGGGGAGCGuGGg -3'
miRNA:   3'- -UCUCaCGGGUAU----UGGuCCUCUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 19137 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 20532 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 22215 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 23468 0.66 0.929922
Target:  5'- cGAG-GCCCuggccGUGGCCAGGuacGGGCuGGu -3'
miRNA:   3'- uCUCaCGGG-----UAUUGGUCCu--CUCGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.