miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 23610 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 25293 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 26688 0.68 0.859281
Target:  5'- cAGAcaGCCCugucuagGGCCGGGAGAggcagccccgagGCGGGc -3'
miRNA:   3'- -UCUcaCGGGua-----UUGGUCCUCU------------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 28371 0.69 0.801285
Target:  5'- gAGAGUcgGCCUA-GGCCcGGGGAGUGGa -3'
miRNA:   3'- -UCUCA--CGGGUaUUGGuCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 30127 0.78 0.348522
Target:  5'- cAGAGcGCCCccAugCAGGGGGGUGGGc -3'
miRNA:   3'- -UCUCaCGGGuaUugGUCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 31680 0.73 0.574909
Target:  5'- ----aGCCCAggGACCAGGgaAGGGUGGGg -3'
miRNA:   3'- ucucaCGGGUa-UUGGUCC--UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 32123 0.7 0.726156
Target:  5'- aGGGGUGCCaCGUcaccCCGGGgugcuGGGGUGGGg -3'
miRNA:   3'- -UCUCACGG-GUAuu--GGUCC-----UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 34064 0.67 0.880534
Target:  5'- gGGGGU-CCCGUGgcacgggGCCGGGGGuccCGGGg -3'
miRNA:   3'- -UCUCAcGGGUAU-------UGGUCCUCuc-GCCC- -5'
29075 5' -55.8 NC_006146.1 + 38809 0.67 0.881235
Target:  5'- cGGGGUGCaCAUcugcAGCCAGGcccuGAGCcuGGGg -3'
miRNA:   3'- -UCUCACGgGUA----UUGGUCCu---CUCG--CCC- -5'
29075 5' -55.8 NC_006146.1 + 39660 0.66 0.934955
Target:  5'- gAGAcUGCCU-UGGCCuuGGAGgcGGCGGGc -3'
miRNA:   3'- -UCUcACGGGuAUUGGu-CCUC--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 39894 0.66 0.934955
Target:  5'- uGAGcgGCCUgcggggcgggaaAcGACgAGGAGGGUGGGg -3'
miRNA:   3'- uCUCa-CGGG------------UaUUGgUCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 40258 0.66 0.913406
Target:  5'- cGGGUGggaUCCGUAGuaGGGAGGcGCGGGc -3'
miRNA:   3'- uCUCAC---GGGUAUUggUCCUCU-CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 42313 0.66 0.92519
Target:  5'- cGGAGUGCCCugcgagguugcugacUGGcCCGGGAggucagugucuGAGcCGGGa -3'
miRNA:   3'- -UCUCACGGGu--------------AUU-GGUCCU-----------CUC-GCCC- -5'
29075 5' -55.8 NC_006146.1 + 43244 0.67 0.871955
Target:  5'- uGGGGUGCCuCGgcGCCAGcgcggccuggacaaGAGgcAGCGGGc -3'
miRNA:   3'- -UCUCACGG-GUauUGGUC--------------CUC--UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 43360 0.68 0.866809
Target:  5'- ----aGCCCGUGGCaGGGGGuggcuuAGCGGGg -3'
miRNA:   3'- ucucaCGGGUAUUGgUCCUC------UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 43545 0.69 0.812697
Target:  5'- uGGGGUGUCCGUGggugagacggagacgGcguacugagcguuCCcGGGGAGCGGGg -3'
miRNA:   3'- -UCUCACGGGUAU---------------U-------------GGuCCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 44119 0.68 0.859281
Target:  5'- cGGcUGCCCG--GCgAGGAGGGgGGGc -3'
miRNA:   3'- uCUcACGGGUauUGgUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 44775 0.68 0.859281
Target:  5'- gAGGGUGCCgugCcgGGCuCAGGGGGGCGc- -3'
miRNA:   3'- -UCUCACGG---GuaUUG-GUCCUCUCGCcc -5'
29075 5' -55.8 NC_006146.1 + 44940 0.69 0.81873
Target:  5'- -----uCUCGUGGCCAGGGGcGCGGGg -3'
miRNA:   3'- ucucacGGGUAUUGGUCCUCuCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 46892 0.66 0.919147
Target:  5'- uGGGUGUCCGacgagcguaGGCCGGGuuGAGgGGGu -3'
miRNA:   3'- uCUCACGGGUa--------UUGGUCCu-CUCgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.