miRNA display CGI


Results 41 - 60 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 47747 0.66 0.934955
Target:  5'- gAGGGgcugGCCCugggGAC--GGAGAGCGGc -3'
miRNA:   3'- -UCUCa---CGGGua--UUGguCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 47995 0.67 0.881235
Target:  5'- cAGAGgugGCUgGUGG-CGGGAGgcuuGGCGGGg -3'
miRNA:   3'- -UCUCa--CGGgUAUUgGUCCUC----UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 48608 0.66 0.913406
Target:  5'- aAGGGUGuUCCAgucgucggguGCCGuGGGGGCGGGc -3'
miRNA:   3'- -UCUCAC-GGGUau--------UGGUcCUCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 49570 0.68 0.866809
Target:  5'- uGAG-GCCCAgcGCUgAGGccAGGGUGGGg -3'
miRNA:   3'- uCUCaCGGGUauUGG-UCC--UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 50162 0.67 0.874129
Target:  5'- --cGUcGUCCAgGACCAGGGGGGCGu- -3'
miRNA:   3'- ucuCA-CGGGUaUUGGUCCUCUCGCcc -5'
29075 5' -55.8 NC_006146.1 + 51425 0.68 0.858517
Target:  5'- uGGAGUGCgCGgGACUAgagguguGGAGAuggGCGGGa -3'
miRNA:   3'- -UCUCACGgGUaUUGGU-------CCUCU---CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 51795 0.74 0.554887
Target:  5'- cGAGUccaGCCacuUGAUCAGGAGGGCGGc -3'
miRNA:   3'- uCUCA---CGGgu-AUUGGUCCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 53033 0.69 0.800397
Target:  5'- cGGGUGCCCAUcucAGCCGcugucaucaaguuGGGGAGCa-- -3'
miRNA:   3'- uCUCACGGGUA---UUGGU-------------CCUCUCGccc -5'
29075 5' -55.8 NC_006146.1 + 53112 0.74 0.544951
Target:  5'- cGGAGgcgGCCCGgc-CCGGGGGAGCGcGa -3'
miRNA:   3'- -UCUCa--CGGGUauuGGUCCUCUCGC-Cc -5'
29075 5' -55.8 NC_006146.1 + 53475 0.73 0.563874
Target:  5'- cGGGUGCCuCGUcggucagGGCCGGGGGuGCGGu -3'
miRNA:   3'- uCUCACGG-GUA-------UUGGUCCUCuCGCCc -5'
29075 5' -55.8 NC_006146.1 + 54995 0.66 0.923026
Target:  5'- cGGGGUGgCCGgaaGCCccccgggcgggaugGGGGcGGGCGGGa -3'
miRNA:   3'- -UCUCACgGGUau-UGG--------------UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 55760 0.67 0.894786
Target:  5'- ----cGCCCGgcggcgGGCCAGGGGcAGCGaGGc -3'
miRNA:   3'- ucucaCGGGUa-----UUGGUCCUC-UCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 57007 0.66 0.913406
Target:  5'- aAGGG-GgCCAUGGCCgAGGAGgagguGGCGGu -3'
miRNA:   3'- -UCUCaCgGGUAUUGG-UCCUC-----UCGCCc -5'
29075 5' -55.8 NC_006146.1 + 57305 0.66 0.915731
Target:  5'- aGGAG-GCCUuugugGACCuGGAcgcguggcucucuggGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGua---UUGGuCCU---------------CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 61358 0.67 0.881235
Target:  5'- cAGcGUGCCCGUGuacuGCgAGGAGGGaGGa -3'
miRNA:   3'- -UCuCACGGGUAU----UGgUCCUCUCgCCc -5'
29075 5' -55.8 NC_006146.1 + 63019 0.68 0.869762
Target:  5'- cGGGUGCCCgacGUAACCugauuuacaccacuGGccuAGAGCGGa -3'
miRNA:   3'- uCUCACGGG---UAUUGGu-------------CC---UCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 64375 0.66 0.913406
Target:  5'- -uGGUGCCC---ACCAGGGGAuGCGc- -3'
miRNA:   3'- ucUCACGGGuauUGGUCCUCU-CGCcc -5'
29075 5' -55.8 NC_006146.1 + 66095 0.67 0.888122
Target:  5'- cGAGUaUCUGUugGGCCGGGGGAGCuacGGGg -3'
miRNA:   3'- uCUCAcGGGUA--UUGGUCCUCUCG---CCC- -5'
29075 5' -55.8 NC_006146.1 + 66167 0.71 0.706392
Target:  5'- cAGGGUGCUCAUGACCgAGGgccAGAcGCaGGa -3'
miRNA:   3'- -UCUCACGGGUAUUGG-UCC---UCU-CGcCC- -5'
29075 5' -55.8 NC_006146.1 + 66660 0.67 0.894786
Target:  5'- -aAGUG-CUAUAuCCugAGGGGGGCGGGg -3'
miRNA:   3'- ucUCACgGGUAUuGG--UCCUCUCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.