miRNA display CGI


Results 1 - 20 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 170465 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 170283 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 170226 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 170061 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 169534 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 169352 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 169295 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 169129 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 168602 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 168420 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 168363 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 168197 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167669 0.7 0.735922
Target:  5'- gGGGcGUGuCCCGcGACCcgaGGGGcGAGCGGGg -3'
miRNA:   3'- -UCU-CAC-GGGUaUUGG---UCCU-CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167488 0.67 0.901223
Target:  5'- gAGGGUGUgCcUGGCgGgGGAGAGgGGGc -3'
miRNA:   3'- -UCUCACGgGuAUUGgU-CCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 167431 0.67 0.881235
Target:  5'- cGGGGU-CCCGgGGCgGGGGGucgGGCGGGc -3'
miRNA:   3'- -UCUCAcGGGUaUUGgUCCUC---UCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 167265 0.68 0.835505
Target:  5'- gGGAGgGCCCGgGGCCGcgcguGGGGAuggccgGCGGGa -3'
miRNA:   3'- -UCUCaCGGGUaUUGGU-----CCUCU------CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 166641 0.69 0.783236
Target:  5'- uGAGUGgCCGcggacGCCAGaGcGAGCGGGa -3'
miRNA:   3'- uCUCACgGGUau---UGGUC-CuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 166242 0.67 0.907431
Target:  5'- ----cGCCCAcccggcCCAGGAcGGCGGGg -3'
miRNA:   3'- ucucaCGGGUauu---GGUCCUcUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 163455 0.73 0.605227
Target:  5'- cGGGGUGCCCGgucuugCAGGuucuGAGUGGGu -3'
miRNA:   3'- -UCUCACGGGUauug--GUCCu---CUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 162400 0.69 0.792332
Target:  5'- cGGGacCCCGgugGGCCAGGAuGGUGGGg -3'
miRNA:   3'- uCUCacGGGUa--UUGGUCCUcUCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.