miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29075 5' -55.8 NC_006146.1 + 158565 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 158513 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157600 0.7 0.745599
Target:  5'- -uGGUGCCCAgcACguGGGGGuagucGCGGGc -3'
miRNA:   3'- ucUCACGGGUauUGguCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157531 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 157346 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 157208 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 156809 0.69 0.801285
Target:  5'- uGGAcggGCCUgggGUGGCCGGGgaGGGGUGGGg -3'
miRNA:   3'- -UCUca-CGGG---UAUUGGUCC--UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 155956 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 155486 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 155434 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 154453 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 154268 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 154130 0.66 0.929922
Target:  5'- gAGAG-GCCgA-AAgCGGGGGGGgGGGa -3'
miRNA:   3'- -UCUCaCGGgUaUUgGUCCUCUCgCCC- -5'
29075 5' -55.8 NC_006146.1 + 153731 0.69 0.801285
Target:  5'- uGGAcggGCCUgggGUGGCCGGGgaGGGGUGGGg -3'
miRNA:   3'- -UCUca-CGGG---UAUUGGUCC--UCUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 153401 0.67 0.901223
Target:  5'- gAGGGUGCCaagggaGUucCCGGG--GGCGGGu -3'
miRNA:   3'- -UCUCACGGg-----UAuuGGUCCucUCGCCC- -5'
29075 5' -55.8 NC_006146.1 + 152878 0.67 0.907431
Target:  5'- uGGAGgugGCCCcgGGCgCAGGGcaaggcgauGGGCGaGGg -3'
miRNA:   3'- -UCUCa--CGGGuaUUG-GUCCU---------CUCGC-CC- -5'
29075 5' -55.8 NC_006146.1 + 152408 0.7 0.726156
Target:  5'- uGAG-GCCCAggGGCgAGGGGAcugagGCGGGc -3'
miRNA:   3'- uCUCaCGGGUa-UUGgUCCUCU-----CGCCC- -5'
29075 5' -55.8 NC_006146.1 + 152356 0.67 0.872682
Target:  5'- gAGAGgcagggccuguaGCCCGUGACuCuGGAGGaCGGGg -3'
miRNA:   3'- -UCUCa-----------CGGGUAUUG-GuCCUCUcGCCC- -5'
29075 5' -55.8 NC_006146.1 + 151375 0.66 0.913406
Target:  5'- uAGGG-GCCCugGGCCccGAGGGCGGc -3'
miRNA:   3'- -UCUCaCGGGuaUUGGucCUCUCGCCc -5'
29075 5' -55.8 NC_006146.1 + 151190 0.74 0.52526
Target:  5'- gGGAGaGUCUcUGGCCGGGcGGGCGGGg -3'
miRNA:   3'- -UCUCaCGGGuAUUGGUCCuCUCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.